Peter Sobolewski
Imaging Applications, Research IT
The Jackson Laboratory
napari core developer
This repository contains materials for the "Intermediate napari: from exploratory workflow to widgets" workshop
run at I2K 2024
The workshop will involve live coding, showing how one can use a Jupyter notebook for exploratory data analysis in napari and then make simple widgets based on that. The target is someone who has some familiarity with the napari application and bioimage analysis in Python and wants to take the next steps to customize/extend the napari GUI. For this, magicgui will be introduced as a way to generate widgets quickly and easily.
The material is a part of a prior workshop that was run at JAX, which has more introductory material as well: https://thejacksonlaboratory.github.io/intro-napari-workshop/. The basis for the workshop materials was the napari-workshops-template project.
Some notebooks were removed and reorganized. For information on preparing your own workshop materials using the template, please see the documentation for the napari-workshops-template repository.