This repository contains osNEF methods for constructing functional neural networks with biologically detailed neurons. For questions or comments, please submit an issue, or email psipeter@gmail.com

Clone the repository

git clone https://github.com/psipeter/functional_detailed_neurons.git

cd functional_detailed_neurons

Install virtual environment

pip3 install pipenv

mkdir .venv

pipenv --python=3.7

pipenv shell

Install packages

pipenv install numpy scipy matplotlib seaborn pandas nengo nengolib neuron hyperopt

Compile NEURON channel mechanisms detailed_neurons

cd NEURON

../.venv/bin/nrnivmodl

Run the simulations

python tuning.py