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Question about small niche clusters when analyzing multiple Xenium samples with BANKSY

Status: Open.

#56 In prabhakarlab/Banksy;

· Clement-zcj opened on Aug 14, 2025

Recomended workflow for multimodal datasets

Status: Open.

#53 In prabhakarlab/Banksy;

· vraghu90 opened on Jul 8, 2025

Run Banksy with integrated Xenium data

Status: Open.

#52 In prabhakarlab/Banksy;

· kasayadior opened on Jul 8, 2025

RunBanksy throws error in [.data.frame due to with = FALSE argument

Status: Open.

#46 In prabhakarlab/Banksy;

· TdzBAS opened on Jun 4, 2025

integration with Harmony

Status: Open.

#45 In prabhakarlab/Banksy;

· prayer-wu opened on Mar 25, 2025

About normalized cross-connectivity (NCC) score

Status: Open.

#43 In prabhakarlab/Banksy;

· makabakayu opened on Mar 11, 2025

Merging Seurat Objects with BANKSY assay

Status: Open.

#42 In prabhakarlab/Banksy;

· luke-mcn opened on Feb 27, 2025

Error in RunBanksy code

Status: Open.

#41 In prabhakarlab/Banksy;

· salasd opened on Oct 9, 2024