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18S rRNA primers

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Daniel Vaulot edited this page Oct 24, 2019 · 15 revisions

A compilation of 18S rRNA primers from the literature, mapped onto the reference SSU sequence for Saccharomyces cerevisiae (FU970071, 1799 nucleotides, first nucleotide marked as 1) .

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Columns are as follows

column definition
primer_id primer id in pr2-primers database
name original name of the primer
synonyms synonyms found in the litterature
sequence
sequence revcomp reverse complement of the sequence
direction forward (fwd) or reverse (rev)
start start of primer relative to FU970071
end end of primer relative to FU970071
specificity is the primer specific of a group
reference original reference where primer was first defined
doi link to original paper

Please report errors or primers not listed here in the Issues page of the PR2 primers database.

Contributors

primer_id name synonyms sequence sequence revcomp direction start end specificity reference doi
71 PF1 TGCGCTACCTGGTTGATCCTGCC GGCAGGATCAACCAGGTAGCGCA fwd -5 17 Keeling, 2002 https://doi.org/10.1078/0932-4739-00874
78 EukA AACCTGGTTGATCCTGCCAGT ACTGGCAGGATCAACCAGGTT fwd 0 20 Medlin et al. 1988 https://doi.org/10.1016/0378-1119(88)90066-2
81 Euk328F ACCTGGTTGATCCTGCCAG CTGGCAGGATCAACCAGGT fwd 1 19 Moon et al. 2001 https://doi.org/10.1038/35054541
138 18SV1V2F ACCTGGTTGATCCTGCCA TGGCAGGATCAACCAGGT fwd 1 18 non-metazoan Clerissi et al. (2018) https://doi.org/10.3389/fmicb.2018.02043
109 SF2Dark GTTGATCCTGCCAGTAGTGT ACACTACTGGCAGGATCAAC fwd 6 25 dark-spored Myxomycetes Fiore-Donno, A.M. (2016) Scientific Reports, 6, 19068.
142 25F CATATGCTTGTCTCAAAGATTAAGCCA TGGCTTAATCTTTGAGACAAGCATATG fwd 24 50 Cavalier-Smith et al. (2009) https://doi.org/10.1016/j.protis.2009.03.003
79 63f ACGCTTGTCTCAAAGATTA TAATCTTTGAGACAAGCGT fwd 27 44 Lepere et al. (2011) https://doi.org/10.1111/j.1574-6941.2011.01072.x
136 F04 GCTTGTCTCAAAGATTAAGCC GGCTTAATCTTTGAGACAAGC fwd 29 49 Bik et al. (2012) https://doi.org/10.1111/j.1365-294X.2011.05297.x
107 SFAca22 CGGYGAGACTGCGGATGG CCATCCGCAGTCTCRCCG fwd 78 95 Acanthamoeba Fiore-Donno, A.M. (2016) Scientific Reports, 6, 19068.
88 Cer2F ATTTCTGCCCTATCAGCT AGCTGATAGGGCAGAAAT fwd 300 317 Cercozoa Lentendu, G. et al. (2014) https://doi.org/10.1111/mec.12819
139 18SV1V2R GTARKCCWMTAYMYTACC GGTARKRTAKWGGMYTAC rev 324 341 non-metazoan Clerissi et al. (2018) https://doi.org/10.3389/fmicb.2018.02043
137 R22 GCCTGCTGCCTTCCTTGGA TCCAAGGAAGGCAGCAGGC rev 412 430 Bik et al. (2012) https://doi.org/10.1111/j.1365-294X.2011.05297.x
65 Uni18SF AGGGCAAKYCTGGTGCCAGC GCTGGCACCAGRMTTGCCCT fwd 549 568 Zhan et al. 2013 https://doi.org/10.1111/2041-210X.12037
9 3NDf GGCAAGTCTGGTGCCAG CTGGCACCAGACTTGCC fwd 551 567 Cavalier-Smith et al. (2009) https://doi.org/10.1016/j.protis.2009.03.003
13 515F GTGCCAGCMGCCGCGGTAA TTACCGCGGCKGCTGGCAC fwd 561 579 Parfrey et al. 2014 https://doi.org/10.3389/fmicb.2014.00298
19 515FY GTGYCAGCMGCCGCGGTA TACCGCGGCKGCTGRCAC fwd 561 578 Parada et al. (2015) https://doi.org/10.1111/1462-2920.13023
25 EUK581-F UNonMetF GTGCCAGCAGCCGCG CGCGGCTGCTGGCAC fwd 561 575 Carnegie et al. (2003) https://doi.org/10.3354/dao054219
31 515F Univ GTGYCAGCMGCCGCGGTAA TTACCGCGGCKGCTGRCAC fwd 561 579 Needham & Fuhrman 2016 https://doi.org/10.1038/nmicrobiol.2016.5
4 563f GCCAGCAVCYGCGGTAAY RTTACCGCRGBTGCTGGC fwd 563 580 Hugerth et al. (2014) https://doi.org/10.1371/journal.pone.0095567
7 V4_1f CCAGCASCYGCGGTAATWCC GGWATTACCGCRGSTGCTGG fwd 564 583 Bass et al. (2016) https://doi.org/10.1111/1462-2920.13235
8 TAReuk454FWD1 CCAGCASCYGCGGTAATTCC GGAATTACCGCRGSTGCTGG fwd 564 583 Stoeck et al (2010) https://doi.org/10.1111/j.1365-294X.2009.04480.x
67 Claudia Vannini (F) CCAGCASCCGCGGTAATWCC GGWATTACCGCGGSTGCTGG fwd 564 583 ciliates Boscaro et al. 2017 https://doi.org/10.1007/s00248-016-0912-8
1 F-566 CAGCAGCCGCGGTAATTCC GGAATTACCGCGGCTGCTG fwd 565 583 Hadziavdic et al. (2014) https://doi.org/10.1371/journal.pone.0087624
10 EUKAF GCCGCGGTAATTCCAGCTC GAGCTGGAATTACCGCGGC fwd 570 588 Moreno et al. (2018) https://doi.org/10.1016/j.ijheh.2017.10.008
69 ParaV45F GCYGCGGTAATWCCAGCTCT AGAGCTGGWATTACCGCRGC fwd 570 589 parabasalids Jasso-Selles et al. 2017 https://doi.org/10.1016/j.ejop.2017.09.001
12 E572F CYGCGGTAATTCCAGCTC GAGCTGGAATTACCGCRG fwd 571 588 Comeau et al. (2011) https://doi.org/10.1371/journal.pone.0027492
14 528F Nex_18S_0587_F CCGCGGTAATTCCAGCTC GAGCTGGAATTACCGCGG fwd 571 588 Alves-de-Souza et al (2011) https://doi.org/10.5194/bg-8-2125-2011
17 NSF563 CGCGGTAATTCCAGCTCCA TGGAGCTGGAATTACCGCG fwd 572 590 Mangot et al. 2013 https://doi.org/10.1111/1462-2920.12065
75 SSU556F CGCGGTAATTCCAGCTYC GRAGCTGGAATTACCGCG fwd 572 589 dinoflagellates Smith et al. 2017 https://doi.org/10.1080/00288330.2017.1298632
2 A-528F 528Flong GCGGTAATTCCAGCTCCAA TTGGAGCTGGAATTACCGC fwd 573 591 Cheung et al. 2010 https://doi.org/10.1038/ismej.2010.26
73 DIV4for GCGGTAATTCCAGCTCCAATAG CTATTGGAGCTGGAATTACCGC fwd 573 594 diatoms Visco et al. 2015 https://doi.org/10.1021/es506158m
3 574*f CGGTAAYTCCAGCTCYV BRGAGCTGGARTTACCG fwd 574 590 Hugerth et al. (2014) https://doi.org/10.1371/journal.pone.0095567
15 590F CGGTAATTCCAGCTCCAATAGC GCTATTGGAGCTGGAATTACCG fwd 574 595 Venter et al 2017 Protist https://doi.org/10.1016/j.protis.2017.03.005
32 Euk528F CGGTAATTCCAGCTCC GGAGCTGGAATTACCG fwd 574 589 Edgcomb et al. (2011) https://doi.org/10.1038/ismej.2011.6
132 574f CGGTAAYTCCAGCTCYAV BTRGAGCTGGARTTACCG fwd 574 591 Hugerth et al. (2014) https://doi.org/10.1371/journal.pone.0095567
20 D512for ATTCCAGCTCCAATAGCG CGCTATTGGAGCTGGAAT fwd 579 596 diatoms Zimmermann et al. 2011 https://doi.org/10.1007/s13127-011-0050-6
21 Cerc479F TGTTGCAGTTAAAAAGCTCGT ACGAGCTTTTTAACTGCAACA fwd 608 628 Harder et al. (2016) https://doi.org/10.1038/ismej.2016.31
16 EK-565F-NGS EK-565F GCAGTTAAAAAGCTCGTAGT ACTACGAGCTTTTTAACTGC fwd 612 631 Simon et al. (2015) https://doi.org/10.1111/1462-2920.12591
5 616f TTAAAAVGYTCGTAGTYG CRACTACGARCBTTTTAA fwd 616 633 Hugerth et al. (2014) https://doi.org/10.1371/journal.pone.0095567
6 616*f TTAAARVGYTCGTAGTYG CRACTACGARCBYTTTAA fwd 616 633 Hugerth et al. (2014) https://doi.org/10.1371/journal.pone.0095567
90 S616F_Cerco TTAAAAAGCTCGTAGTTG CAACTACGAGCTTTTTAA fwd 616 633 Cercozoa Fiore-Donno, A.M. et al. (2018) Mol Ecol Resour, 18, 229-239.
91 S616F_Eocer TTAAAAAGCGCGTAGTTG CAACTACGCGCTTTTTAA fwd 616 633 Cercozoa Fiore-Donno, A.M. et al. (2018) Mol Ecol Resour, 18, 229-239.
23 ChloroF TGGCCTATCTTGTTGGTCTGT ACAGACCAACAAGATAGGCCA fwd 822 842 chlorophyceae Valiente Moro et al., (2009) https://doi.org/10.1128/AEM.00509-09
52 Cerc750R TGAATACTAGCACCCCCAAC GTTGGGGGTGCTAGTATTCA rev 871 890 cercozoa Harder et al. (2016) https://doi.org/10.1038/ismej.2016.31
74 DIV4rev3 CTCTGACAATGGAATACGAATA TATTCGTATTCCATTGTCAGAG rev 879 900 diatoms Visco et al. 2015 https://doi.org/10.1021/es506158m
22 DimA RGGGACRGGTGAAATAGGATG CATCCTATTTCACCYGTCCCY fwd 893 913 diplonemids Cannon et al. (2018) https://doi.org/10.1186/s40168-018-0581-6
76 SSU911R ATYCAAGAATTTCACCTCTGAC GTCAGAGGTGAAATTCTTGRAT rev 894 915 dinoflagellates Smith et al. 2017 https://doi.org/10.1080/00288330.2017.1298632
146 690R ATCCAAGAATTTCACCTCTGAC GTCAGAGGTGAAATTCTTGGAT rev 894 915 Alves-de-Souza et al (2011) https://doi.org/10.5194/bg-8-2125-2011
77 B-706R AATCCRAGAATTTCACCTCT AGAGGTGAAATTCTYGGATT rev 897 916 Cheung et al. 2010 https://doi.org/10.1038/ismej.2010.26
127 897f AGAGGTGRAATTCTHRGA TCYDAGAATTYCACCTCT fwd 897 914 Hugerth et al. (2014) https://doi.org/10.1371/journal.pone.0095567
128 897r TCYDAGAATTYCACCTCT AGAGGTGRAATTCTHRGA rev 897 914 Hugerth et al. (2014) https://doi.org/10.1371/journal.pone.0095567
35 R-952 TTGGCAAATGCTTTCGC GCGAAAGCATTTGCCAA rev 935 951 Hadziavdic et al. (2014) https://doi.org/10.1371/journal.pone.0087624
49 NSR951 TTGGYRAATGCTTTCGC GCGAAAGCATTYRCCAA rev 935 951 Mangot et al. (2013) https://doi.org/10.1111/1462-2920.12065
55 PRYM01+7 GATCAGTGAAAACATCCCTGG CCAGGGATGTTTTCACTGATC rev 948 968 Egge et al. (2013) https://doi.org/10.1371/journal.pone.0074371
43 V4 18S Next.Rev ACTTTCGTTCTTGATYRATGA TCATYRATCAAGAACGAAAGT rev 960 980 Piredda et al. (2017) https://doi.org/10.1093/femsec/fiw200
92 S963R_Cerco CAACTTTCGTTCTTGATTAAA TTTAATCAAGAACGAAAGTTG rev 962 982 Cercozoa Fiore-Donno, A.M. et al. (2018) Mol Ecol Resour, 18, 229-239.
37 TAReukREV3 ACTTTCGTTCTTGATYRA TYRATCAAGAACGAAAGT rev 963 980 Stoeck et al (2010) https://doi.org/10.1111/j.1365-294X.2009.04480.x
38 V4RB ACTTTCGTTCTTGATYRR YYRATCAAGAACGAAAGT rev 963 980 Balzano & Leterme 2015 https://doi.org/10.3354/ame01740
42 EUKAR CYTTCGYYCTTGATTRA TYAATCAAGRRCGAARG rev 963 979 Moreno et al. (2018) https://doi.org/10.1016/j.ijheh.2017.10.008
46 Nex_18S_0964_R GATCCCYYAACTTTCGTTCTTGA TCAAGAACGAAAGTTRRGGGATC rev 967 989 Kim et al. 2016 EMI https://doi.org/?
68 Claudia Vannini (R) TCTGRTYGTCTTTGATCCCYTA TARGGGATCAAAGACRAYCAGA rev 981 1002 ciliates Boscaro et al. 2017 https://doi.org/10.1007/s00248-016-0912-8
40 V4_euk_R1 GACTACGACGGTATCTRATCRTCTTCG CGAAGAYGATYAGATACCGTCGTAGTC rev 989 1015 Brate et al. (2010) https://doi.org/10.1038/ismej.2010.39
41 V4_euk_R2 ACGGTATCTRATCRTCTTCG CGAAGAYGATYAGATACCGT rev 989 1008 Brate et al. (2010) https://doi.org/10.1038/ismej.2010.39
44 E1009R AYGGTATCTRATCRTCTTYG CRAAGAYGATYAGATACCRT rev 989 1008 Comeau et al. (2011) https://doi.org/10.1371/journal.pone.0027492
66 Uni18SR GRCGGTATCTRATCGYCTT AAGRCGATYAGATACCGYC rev 991 1009 Zhan et al. 2013 https://doi.org/10.1111/2041-210X.12037
50 S12.2R GACTACGACGGTATCTRATC GATYAGATACCGTCGTAGTC rev 996 1015 Pawlowski and Smirnov unpublished https://doi.org/?
51 D978rev GACTACGATGGTATCTAATC GATTAGATACCATCGTAGTC rev 996 1015 diatoms Zimmermann et al. 2011 https://doi.org/10.1007/s13127-011-0050-6
48 EUK1134-R UNonMetR TTTAAGTTTCAGCCTTGCG CGCAAGGCTGAAACTTAAA rev 1120 1138 Carnegie et al. (2003) https://doi.org/10.3354/dao054219
30 926wF AAACTYAAAKGAATTGRCGG CCGYCAATTCMTTTRAGTTT fwd 1130 1149 Wilkins et al. 2013 https://doi.org/10.1038/ncomms3457
60 926R CCGYCAATTYMTTTRAGTTT AAACTYAAAKRAATTGRCGG rev 1130 1149 Needham & Fuhrman 2016 https://doi.org/10.1038/nmicrobiol.2016.5
36 1132r CCGTCAATTHCTTYAART AYTTRAAGDAATTGACGG rev 1132 1149 Hugerth et al. (2014) https://doi.org/10.1371/journal.pone.0095567
70 ParaV45R AAGRAATTGACGGAAGNGCA TGCNCTTCCGTCAATTYCTT rev 1137 1156 parabasalids Jasso-Selles et al. 2018 https://doi.org/10.1016/j.ejop.2017.09.001
45 1119r GGTGCCCTTCCGTCA TGACGGAAGGGCACC rev 1144 1158 Parfrey et al. 2014 https://doi.org/10.3389/fmicb.2014.00298
53 DimB CAAATTGAGCCGCAGACTCC GGAGTCTGCGGCTCAATTTG rev 1168 1187 Cannon et al. (2018) https://doi.org/10.1186/s40168-018-0581-6
34 R-1200 CCCGTGTTGAGTCAAATTAAGC GCTTAATTTGACTCAACACGGG rev 1178 1199 Hadziavdic et al. (2014) https://doi.org/10.1371/journal.pone.0087624
129 F-1183 AATTTGACTCAACACGGG CCCGTGTTGAGTCAAATT fwd 1182 1199 Hadziavdic et al. (2014) https://doi.org/10.1371/journal.pone.0087624
148 1055R ACGGCCATGCACCACCACCCAT ATGGGTGGTGGTGCATGGCCGT rev 1260 1281 Alves-de-Souza et al (2011) https://doi.org/10.5194/bg-8-2125-2011
147 1055F GGTGGTGCATGGCCGTTCTT AAGAACGGCCATGCACCACC fwd 1266 1285 Alves-de-Souza et al (2011) https://doi.org/10.5194/bg-8-2125-2011
47 1300R CACCAACTAAGAACGGCCATGC GCATGGCCGTTCTTAGTTGGTG rev 1272 1293 Venter et al 2017 Protist https://doi.org/10.1016/j.protis.2017.03.005
54 ChloroR GAATCAACCTGACAAGGCAAC GTTGCCTTGTCAGGTTGATTC rev 1295 1315 chlorophyceae Valiente Moro et al., (2009) https://doi.org/10.1128/AEM.00509-09
131 R-1443 AAGGGCATCACAGACCTG CAGGTCTGTGATGCCCTT rev 1425 1442 Hadziavdic et al. (2014) https://doi.org/10.1371/journal.pone.0087624
27 1380F CCCTGCCHTTTGTACACAC GTGTGTACAAADGGCAGGG fwd 1617 1635 Amaral Zettler et al (2009) https://doi.org/10.1371/journal.pone.0006372
62 U1391R GGGCGGTGTGTACAARGR YCYTTGTACACACCGCCC rev 1623 1640 Edgcomb et al. (2011) https://doi.org/10.1038/ismej.2011.6
28 1389F TTGTACACACCGCCC GGGCGGTGTGTACAA fwd 1626 1640 Amaral Zettler et al (2009) https://doi.org/10.1371/journal.pone.0006372
29 1388F TTGTACACACCGCCCGTCGC GCGACGGGCGGTGTGTACAA fwd 1626 1645 Piredda et al. 2017 https://doi.org/10.1093/femsec/fiw200
26 1391F GTACACACCGCCCGTC GACGGGCGGTGTGTAC fwd 1628 1643 Lane, D.J. (1991) https://doi.org/?
59 1392-R ACGGGCGGTGTGTRC GYACACACCGCCCGT rev 1628 1642 Wilkins et al. 2013 https://doi.org/10.1038/ncomms3457
145 18r71 GCGACGGGCGGTGTGTAC GTACACACCGCCCGTCGC rev 1628 1645 Alves-de-Souza et al (2011) https://doi.org/10.5194/bg-8-2125-2011
95 1801r ACGGAAACCTTGTTACGACTTC GAAGTCGTAACAAGGTTTCCGT rev 1753 1774 Plasmodiophorida Bass, D., et al. (2018) Frontiers in Microbiology, 10
61 U1492R GGTTACCTTGTTACGACTT AAGTCGTAACAAGGTAACC rev 1754 1772 Edgcomb et al. (2011) https://doi.org/10.1038/ismej.2011.6
63 U1517R ACGGCTACCTTGTTACGACTT AAGTCGTAACAAGGTAGCCGT rev 1754 1774 Edgcomb et al. (2011) https://doi.org/10.1038/ismej.2011.6
80 1818r ACGGAAACCTTGTTACGA TCGTAACAAGGTTTCCGT rev 1757 1774 Lepere et al. 2011 https://doi.org/10.1111/j.1574-6941.2011.01072.x
57 EukB FAD4, 1528R TGATCCTTCTGCAGGTTCACCTAC GTAGGTGAACCTGCAGAAGGATCA rev 1773 1796 Medlin et al. 1988 https://doi.org/10.1016/0378-1119(88)90066-2
58 1510R CCTTCYGCAGGTTCACCTAC GTAGGTGAACCTGCRGAAGG rev 1773 1792 Amaral Zettler et al (2009) https://doi.org/10.1371/journal.pone.0006372
143 1801R TGATCCTTCTGCAGGTTCACCT AGGTGAACCTGCAGAAGGATCA rev 1775 1796 Cavalier-Smith et al. (2009) https://doi.org/10.1016/j.protis.2009.03.003
82 152+ TTACATGGATAACCGTGGTAATTC GAATTACCACGGTTATCCATGTAA fwd Tintinnids Santoferrara, L., et al. (2018) Journal of Plankton Research, 40, 209–221 https://doi.org/10.1093/plankt/fby011
83 528- CCCGGCCCGTTATTTCTTGT ACAAGAAATAACGGGCCGGG rev Tintinnids Santoferrara, L., et al. (2018) Journal of Plankton Research, 40, 209–222 https://doi.org/10.1093/plankt/fby011
89 Cer1R ATACTAGCACCCCCAACT AGTTGGGGGTGCTAGTAT rev Cercozoa Lentendu, G. et al. (2014) https://doi.org/10.1111/mec.12819
93 S947R_Cerco AAGAAGACATCCTTGGTG CACCAAGGATGTCTTCTT rev Cercozoa Fiore-Donno, A.M. et al. (2018) Mol Ecol Resour, 18, 229-239.
94 1301f GATTGAAGCTCTTTCTTGATCACTTC GAAGTGATCAAGAAAGAGCTTCAATC fwd Plasmodiophorida Bass, D., et al. (2018) Frontiers in Microbiology, 9
96 s14F1 AAGGGCACCACAAGAACGC GCGTTCTTGTGGTGCCCTT fwd Foraminifera Pawlowski, J., et al., (2014) https://doi.org/10.1111/1755-0998.12261
97 s15.3 CCTATCACATAATCATGAAAG CTTTCATGATTATGTGATAGG rev Foraminifera Pawlowski, J., et al., (2014) https://doi.org/10.1111/1755-0998.12261
98 Chryso_240 GGAAACCAATGCGGGGCAAC GTTGCCCCGCATTGGTTTCC fwd Chrysophyceae Lentendu, G. et al. (2014) https://doi.org/10.1111/mec.12819
99 Chryso_651 CTATTTTGCTCACAGTAAATGACGAG CTCGTCATTTACTGTGAGCAAAATAG rev Chrysophyceae Lentendu, G. et al. (2014) https://doi.org/10.1111/mec.12819
104 Kineto_80 CATCAGACGYAATCTGCCGC GCGGCAGATTRCGTCTGATG fwd Kinetoplastea Lentendu, G. et al. (2014) https://doi.org/10.1111/mec.12819
105 Kineto_651 TTGGTCGCRCTTYTTTAGTCACAG CTGTGACTAAARAAGYGCGACCAA rev Kinetoplastea Lentendu, G. et al. (2014) https://doi.org/10.1111/mec.12819
106 SRAca28 CCAATTACAAGACTCTTRTCGAG CTCGAYAAGAGTCTTGTAATTGG fwd Acanthamoeba Fiore-Donno, A.M. (2016) Scientific Reports, 6, 19068.
108 SR19Dark GTCCTCTAATTGTTACTCGAD HTCGAGTAACAATTAGAGGAC fwd dark-spored Myxomycetes Fiore-Donno, A.M. (2016) Scientific Reports, 6, 19068.
112 Pdir1 GATTTCGGGCGGGTTCCA TGGAACCCGCCCGAAATC fwd Pedinophyceae Milyutina et al. 2019 https://doi.org/10.1002/mbo3.892
113 Pdir2 GATCGGGCTTCGGTTCGAG CTCGAACCGAAGCCCGATC fwd Pedinophyceae Milyutina et al. 2019 https://doi.org/10.1002/mbo3.892
114 Prev2 CTCGCGGAACTCGAACCGAAG CTTCGGTTCGAGTTCCGCGAG rev Pedinophyceae Milyutina et al. 2019 https://doi.org/10.1002/mbo3.892
115 Pdir3 CCTCAGCCTGCTAAATAGCTAC GTAGCTATTTAGCAGGCTGAGG fwd Pedinophyceae Milyutina et al. 2019 https://doi.org/10.1002/mbo3.892
116 Pdir4 GACTTTCGGGGTTTTACCCGGA TCCGGGTAAAACCCCGAAAGTC fwd Pedinophyceae Milyutina et al. 2019 https://doi.org/10.1002/mbo3.892
133 S14F1 AAGGGCACCACAAGAACGC GCGTTCTTGTGGTGCCCTT fwd foraminifera de Vargas (1999)
134 S19F GTGCATGGCCGTTCTTAGTTC GAACTAAGAACGGCCATGCAC rev foraminifera Morard et al. (2011) https://doi.org/10.1371/journal.pone.0026665
135 S15rF CCCGTACRAGGCATTCCTAG CTAGGAATGCCTYGTACGGG fwd foraminifera Morard et al. (2011) https://doi.org/10.1371/journal.pone.0026665
140 18SV1V2Block CTACCTTACCATCGACAGTTGATAG CTATCAACTGTCGATGGTAAGGTAG blocking Pocillopora damicornis Clerissi et al. (2018) https://doi.org/10.3389/fmicb.2018.02043
141 18SV4Block TCTTGATTAATGAAAACATTCTTGGC GCCAAGAATGTTTTCATTAATCAAGA blocking Pocillopora damicornis Clerissi et al. (2018) https://doi.org/10.3389/fmicb.2018.02043
144 329R GTGAACCTGCRGAAGGATCA TGATCCTTCYGCAGGTTCAC rev Alves-de-Souza et al (2011) https://doi.org/10.5194/bg-8-2125-2011
151 SAR_V3_F AYTCAGGGAGGTAGTGACAAG CTTGTCACTACCTCCCTGART fwd SAR Sisson et al. (2018) https://doi.org/10.1093/plankt/fby020
152 SAR_V3_R RACTACGAGCTTTTTAACTGC GCAGTTAAAAAGCTCGTAGTY rev SAR Sisson et al. (2018) https://doi.org/10.1093/plankt/fby020
155 NS1 GTAGTCATATGCTTGTCTC GAGACAAGCATATGACTAC fwd White et al. (1990) https://doi.org/10.1016/B978-0-12-372180-8.50042-1
156 NS2 GGCTGCTGGCACCAGACTTGC GCAAGTCTGGTGCCAGCAGCC rev White et al. (1990) https://doi.org/10.1016/B978-0-12-372180-8.50042-1
157 NS3 GCAAGTCTGGTGCCAGCAGCC GGCTGCTGGCACCAGACTTGC fwd White et al. (1990) https://doi.org/10.1016/B978-0-12-372180-8.50042-1
158 NS4 CTTCCGTCAATTCCTTTAAG CTTAAAGGAATTGACGGAAG rev White et al. (1990) https://doi.org/10.1016/B978-0-12-372180-8.50042-1
159 NS5 AACTTAAAGGAATTGACGGAAG CTTCCGTCAATTCCTTTAAGTT fwd White et al. (1990) https://doi.org/10.1016/B978-0-12-372180-8.50042-1
160 NS6 GCATCACAGACCTGTTATTGCCTC GAGGCAATAACAGGTCTGTGATGC rev White et al. (1990) https://doi.org/10.1016/B978-0-12-372180-8.50042-1
161 NS7 GAGGCAATAACAGGTCTGTGATGC GCATCACAGACCTGTTATTGCCTC fwd White et al. (1990) https://doi.org/10.1016/B978-0-12-372180-8.50042-1
162 NS8 TCCGCAGGTTCACCTACGGA TCCGTAGGTGAACCTGCGGA rev White et al. (1990) https://doi.org/10.1016/B978-0-12-372180-8.50042-1
166 ITS9MUNngs TACACACCGCCCGTCG CGACGGGCGGTGTGTA fwd Tedersoo & Lindahl (2016) https://doi.org/10.1111/1758-2229.12438
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