This repository hosts scripts (jupyter notebooks) to analyze data for our manuscript Plastic landmark anchoring in zebrafish compass neurons soon to be published (the preprint version of the study can be found here).
Preprocessed data to be analyzed by the scripts here are deposited on Zenodo.
Please download the data from Zenodo, and place the unzipped data folders under the data directory.
The scripts are written in python 3.10 within the framework of jupyter notebooks.
The packages required to run the scripts are listed in environment.yml.
If you are using anaconda as the package manager, you can create a new conda environment with necessary packages by running conda env create -f environment.yml.
Activate the installed conda environment and register it as a kernel for jupyter by running python -m ipykernel install --user --name=landmark.
The notebook save the figures as SVG (in the svg directory) as they appear in the paper figures.