Skip to content

Conversation

sgsutcliffe
Copy link
Collaborator

Update

  • Updated the starAMR version to 0.11.1 PR #34:
    • Removed parse_seqids from makeblastdb command. Fixes issue with contig headers greater than 50 characters.PR #225 NCBI assembled genomes with accessions in the header will have slightly different contig names.

Changed

  • Adding GitHub CI tests against Nextflow 24.10.3. PR #33

apetkau and others added 12 commits October 2, 2025 10:28
Added GitHub CI tests for Nextflow version 24.10.3.
Added support for Nextflow version 24.10.3 and updated error handling for nf-test and Nextflow run steps.
STRY0019104 - Test against GSP version of Nextflow in GitHub CI for all pipelines
@sgsutcliffe sgsutcliffe merged commit 09000db into main Oct 10, 2025
9 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants