Repositories list

• spack-repo

  Public
  Spack Package Repository

  Python

  •

  MIT License

  •5•2•0•2•Updated Aug 18, 2025Aug 18, 2025

• backup-plan-ui

  Public
  A web-based user interface for managing backup plans. This application allows users to view, add, edit, and delete backup plan entries stored in a CSV file, SQLite or MySQL database..

  Go

  •

  MIT License

  •0•0•0•1•Updated Aug 18, 2025Aug 18, 2025

• ibackup

  Public
  Performant backups of many files to iRODS

  Go

  •

  MIT License

  •0•0•0•4•Updated Aug 18, 2025Aug 18, 2025

• yascp

  Public
  scRNA multimodal analysis pipeline utilised for large dataset processing - capable in handeling scRNA, scATAC, Hastag Multiplexed samples

  scrna-seq-analysis

  Python

  •

  GNU General Public License v3.0

  •7•14•0•0•Updated Aug 15, 2025Aug 15, 2025

• QTLight

  Public
  eqtl analysis pipeline using tensorqtl, saige-qtl, LIMIX and jaxQTL

  Python

  •

  GNU General Public License v3.0

  •8•12•0•1•Updated Aug 15, 2025Aug 15, 2025

• ibackup-devkit

  Public
  Go

  •

  MIT License

  •0•0•0•1•Updated Aug 14, 2025Aug 14, 2025

• hgi-cloud

  Public
  terraform and ansible codebase to provision clusters (e.g. hail/spark) at Sanger

  ansiblesparkpacker+ 4terraformopenstackiachail

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •3•1•2•1•Updated Aug 13, 2025Aug 13, 2025

• softpack-mcp

  Public
  FastAPI-based MCP server for connecting softpack spack building commands to external services and LLMs

  Python

  •0•0•0•0•Updated Aug 12, 2025Aug 12, 2025

• r-spack-recipe-builder

  Public
  Spack recipe creator for R packages in CRAN and Bioconductor used to build up the ubeR module for use in farm22

  Python

  •0•0•0•1•Updated Aug 12, 2025Aug 12, 2025

• tickets-search

  Public
  Search through legacy RT and Jira tickets

  Python

  •0•0•0•0•Updated Aug 9, 2025Aug 9, 2025

• wxs-qc

  Public
  Quality control pipeline for human exome/genome cohorts

  Python

  •

  Other

  •0•3•0•0•Updated Aug 8, 2025Aug 8, 2025

• softpack-vm-setup

  Public
  Shell scripts and ansible playbooks for setup of an Openstack VM for Softpack admin (build / test)

  Shell

  •0•0•0•0•Updated Aug 5, 2025Aug 5, 2025

• wtsi-hgi.github.io

  Public
  Github webpage for HGI projects

  HTML

  •0•0•0•1•Updated Aug 1, 2025Aug 1, 2025

• nf_splicing

  Public
  A nextflow pipeline of identifying and quantifying splicing events

  R

  •

  MIT License

  •0•0•0•0•Updated Jul 31, 2025Jul 31, 2025

• nf_splicing_qc

  Public
  a pipeline of sequencing data QC for splicing analysis

  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

• rna_seq

  Public
  Nextflow

  •

  GNU General Public License v3.0

  •2•0•1•0•Updated Jul 28, 2025Jul 28, 2025

• dmscore

  Public
  Nextflow

  •

  MIT License

  •2•0•0•0•Updated Jul 22, 2025Jul 22, 2025

• autoconvey

  Public
  Go

  •0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

• confluence-markdown-publisher

  Public
  A local command-line tool for publishing Markdown files to Atlassian Confluence with automatic conversion to Confluence-compatible format and support for creating subpages

  Python

  •0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• go-farmer

  Public
  Go

  •

  MIT License

  •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• softpack-admin-guide

  Public
  This document provides step-by-step instructions for creating and maintaining Spack packages as a Softpack admin

  HTML

  •0•0•0•0•Updated Jul 16, 2025Jul 16, 2025

• wrstat-ui

  Public
  Go

  •

  MIT License

  •0•0•0•1•Updated Jul 11, 2025Jul 11, 2025

• Jirato

  Public
  AI-Powered JIRA Ticket Creator with Ollama integration and a delightful gelato theme.

  Python

  •0•0•0•0•Updated Jul 11, 2025Jul 11, 2025

• ollama-proxy

  Public
  A simple daemon that automatically manages Ollama GPU jobs on LSF cluster.

  Python

  •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• softpack-builder

  Public
  SoftPack Builder provides services for building SoftPack environments

  Python

  •

  MIT License

  •0•0•1•15•Updated Jun 19, 2025Jun 19, 2025

• softpack-docs

  Public
  SoftPack Documentation

  JavaScript

  •0•0•5•18•Updated Jun 12, 2025Jun 12, 2025

• bsub_memory

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 6, 2025Jun 6, 2025

• sarek

  Public
  Nextflow

  •

  MIT License

  •3•0•0•1•Updated Jun 5, 2025Jun 5, 2025

• MAVEQC

  Public
  R

  •

  MIT License

  •4•0•0•0•Updated May 27, 2025May 27, 2025

• Simple_BGE_Sample_QC

  Public
  Simple sample QC based on Hail for BGE data

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated May 21, 2025May 21, 2025