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    11 repositories

    • UPBEAT-metallomics

      Public
      Metallomic profiles of pregnant women living with obesity in the UK: a secondary analysis of UPBEAT
      publication
      R
      •0•0•0•0•Updated Aug 5, 2025Aug 5, 2025

    • mAT_CE_Atlas

      Public
      An Epigenome Atlas of Mouse Adipocytes
      R
      •1•1•0•0•Updated Jul 6, 2025Jul 6, 2025

    • AT_memory

      Public
      Adipose Tissue Retains an Epigenetic Memory of Obesity that Persists Weight Loss
      R
      •
      GNU General Public License v3.0
      •2•8•0•0•Updated Apr 24, 2025Apr 24, 2025

    • H3K18la

      Public
      H3K18 lactylation marks tissue-specific active enhancers
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Apr 9, 2025Apr 9, 2025

    • nf_rnaseq

      Public
      A Nextflow pipeline to perform quality control, alignment, and quantification of RNA sequencing data.
      rna-seqnextflow-pipeline
      Nextflow
      •0•1•0•0•Updated Feb 25, 2025Feb 25, 2025

    • nf_qc

      Public
      A Nextflow pipeline to perform quality control of sequencing data.
      qcnextflow-pipeline
      Nextflow
      •1•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • nf_peakcalling

      Public
      A Nextflow pipeline to perform peak calling of ChIP-seq, ATAC-seq or CUT&Tag sequencing data.
      peak-callingnextflow-pipeline
      Nextflow
      •0•1•0•0•Updated Feb 25, 2025Feb 25, 2025

    • nf_methylseq

      Public
      A Nextflow pipeline to align and quantify Methylation (Bisulfite) sequencing data.
      bisulfite-sequencingnextflow-pipeline
      Nextflow
      •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • nf_cutntag

      Public
      A Nextflow pipeline to perform quality control, alignment, and feature coverage of CUT&Tag sequencing data.
      nextflow-pipelinecutntag
      Nextflow
      •0•3•0•0•Updated Feb 25, 2025Feb 25, 2025

    • nf_fetchgeo

      Public
      A Nextflow pipeline to download FASTQ, SRA, and processed files from the Gene Expression Omnibus (GEO) database, a public functional genomics data repository supporting MIAME-compliant data submissions.
      geo-databasenextflow-pipeline
      Nextflow
      •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • hPSC_epigenetic_dynamics

      Public
      Epigenetic dynamics during capacitation of naïve human pluripotent stem cells
      publication
      R
      •0•4•0•0•Updated Jun 8, 2023Jun 8, 2023