Repositories list

• virtool-ui

  Public
  The browser frontend for Virtool

  reactfrontendvirtool

  TypeScript

  •6•4•0•10•Updated Oct 13, 2025Oct 13, 2025

• virtool

  Public
  Viral infection diagnostics using next-generation sequencing

  bioinformaticsweb-appdiagnostics+ 1viral-ngs

  Python

  •

  MIT License

  •22•43•8•3•Updated Sep 26, 2025Sep 26, 2025

• dev

  Public
  Developer tooling for Virtool.

  Python

  •4•2•1•0•Updated Sep 26, 2025Sep 26, 2025

• tools

  Public
  Common tools used in Virtool and its workflows

  virtool

  Shell

  •1•1•1•0•Updated Sep 24, 2025Sep 24, 2025

• workflow-nuvs

  Public
  A workflow for identifying novel viruses in Virtool

  workflowspadeshmmer+ 1virtool

  Python

  •7•2•0•2•Updated Sep 19, 2025Sep 19, 2025

• workflow-pathoscope

  Public
  A workflow for detecting known viruses in Virtool

  workflowvirtool

  Rust

  •6•3•0•0•Updated Sep 19, 2025Sep 19, 2025

• workflow-create-sample

  Public
  A workflow for creating Virtool samples

  workflowvirtool

  Python

  •5•1•0•0•Updated Sep 19, 2025Sep 19, 2025

• workflow-build-index

  Public
  A workflow for building Virtool reference indexes

  workflowvirtool

  Python

  •4•1•0•0•Updated Sep 19, 2025Sep 19, 2025

• workflow-create-subtraction

  Public
  A workflow for creating Virtool subtractions

  workflowvirtool

  Python

  •5•1•0•0•Updated Sep 19, 2025Sep 19, 2025

• workflow-iimi

  Public
  A workflow for detecting known viruses using ML in Virtool

  virtool

  Python

  •2•2•1•0•Updated Sep 19, 2025Sep 19, 2025

• iimi

  Public
  Virus diagnostics using machine learning

  R

  •

  Other

  •4•2•2•1•Updated Sep 5, 2025Sep 5, 2025

• virtool-workflow

  Public archive
  A framework for building Virtool workflows

  workflowvirtool

  Python

  •

  MIT License

  •10•3•0•5•Updated Sep 4, 2025Sep 4, 2025

• virtool-maintenance

  Public
  CSS

  •0•1•0•0•Updated Jun 17, 2025Jun 17, 2025

• virtool.ca

  Public
  The Virtool product website

  MDX

  •6•2•1•0•Updated Jun 6, 2025Jun 6, 2025

• ml-plant-viruses

  Public
  A machine learning model for detecting plant viruses.

  0•1•0•0•Updated Jun 2, 2025Jun 2, 2025

• .github

  Public
  0•0•4•0•Updated May 30, 2025May 30, 2025

• issues

  Public
  A public issue board for the Virtool project

  0•0•6•0•Updated May 30, 2025May 30, 2025

• virtool-core

  Public archive
  Core utilities for Virtool and associated packages

  pythonvirtool

  Python

  •

  MIT License

  •9•3•0•0•Updated Mar 24, 2025Mar 24, 2025

• ref-plant-viruses

  Public
  An official Virtool reference for plant viruses

  genomeplant-virusesvirtool

  MIT License

  •3•2•3•0•Updated Mar 21, 2025Mar 21, 2025

• virtool-operator

  Public
  A Helm chart and Kubernetes operator for keeping Virtool updated without downtime.

  Go

  •

  MIT License

  •1•1•0•0•Updated Aug 26, 2024Aug 26, 2024

• virtool-cli

  Public archive
  A command line interface for working with Virtool data

  clivirtool

  Python

  •6•1•0•0•Updated Jul 17, 2024Jul 17, 2024

• uploader

  Public
  Python

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• workflow-aodp

  Public archive
  A workflow for using amplicon analysis in Virtool using AODP

  workflowvirtool

  Python

  •2•0•0•0•Updated Apr 27, 2023Apr 27, 2023

• pyfixtures

  Public
  Pytest style fixtures outside of Pytest

  python

  Python

  •

  MIT License

  •0•2•0•0•Updated Jun 8, 2022Jun 8, 2022

• virtool-hmm

  Public
  Profile HMMs and annotations for Virtool and NuVs

  hmmannotationsviruses+ 1virtool

  Python

  •

  MIT License

  •0•2•1•0•Updated Nov 10, 2017Nov 10, 2017