Repositories list

• primetime

  Public
  Automated pipeline for detection of TF activity from barcoded reporters

  R

  •

  Other

  •0•0•0•0•Updated Aug 13, 2025Aug 13, 2025

• PARM

  Public
  PARM: Promoter Activity Regulatory Model

  Python

  •

  Other

  •0•3•0•0•Updated Aug 4, 2025Aug 4, 2025

• PARM_preprocessing_pipeline

  Public
  Python

  •0•0•0•0•Updated Jul 25, 2025Jul 25, 2025

• Sox2_manuscript

  Public
  HTML

  •0•1•0•0•Updated Jun 18, 2025Jun 18, 2025

• DSB_lamina_detachment

  Public
  0•0•0•0•Updated Jun 6, 2025Jun 6, 2025

• EEPCombinations

  Public
  Repository to acompany Martinez-ara et al., 2023

  Python

  •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

• CCD_repair_protein_project

  Public
  HTML

  •0•0•0•0•Updated Apr 30, 2024Apr 30, 2024

• domainograms

  Public
  Code to plot domainograms from pA-DamID data

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 10, 2023Oct 10, 2023

• pADamID_ABCB1_Novaseq

  Public
  This pipeline has been used to process pA-DamID samples sequenced with Novaseq platform.

  HTML

  •0•0•1•0•Updated Feb 23, 2023Feb 23, 2023

• DSB_TRIP_protocol

  Public
  git repository to accompany Schep et al. 2022

  Python

  •1•0•0•0•Updated Jan 5, 2023Jan 5, 2023

• tagmapAnalyseR

  Public
  tagmapAnalyseR package for transposon integration mapping (TagMap).

  R

  •

  Other

  •2•0•0•0•Updated Sep 2, 2022Sep 2, 2022

• vanSchaik_2022_LADborders

  Public
  Repository to accompany van Schaik et al., 2022.

  HTML

  •0•1•0•0•Updated Aug 9, 2022Aug 9, 2022

• Ki67_dynamics

  Public
  Scripts used in the dynamic genome-Ki67 interactions paper by Tom van Schaik et al

  HTML

  •0•1•0•0•Updated Jul 1, 2022Jul 1, 2022

• EPCombinations

  Public
  Repository to accompany Martinez-Ara et al., 2022.

  HTML

  •0•0•0•0•Updated Apr 1, 2022Apr 1, 2022

• tagmap_hopping

  Public
  pipeline for tagmentation on local transposon "hopping"

  Python

  •1•1•0•0•Updated Jan 11, 2022Jan 11, 2022

• SuRE-SNV-code

  Public
  0•2•0•0•Updated May 17, 2021May 17, 2021

• SuRE-variants-pipeline

  Public
  Python

  •0•0•0•0•Updated May 17, 2021May 17, 2021

• SuRE-raQTL-scripts

  Public
  R

  •0•0•0•0•Updated May 17, 2021May 17, 2021

• LP20191016_flySuRE_project

  Public
  HTML

  •

  Other

  •0•0•0•0•Updated May 7, 2021May 7, 2021

• DSB_repair_TRIP

  Public
  Python

  •0•0•0•0•Updated Apr 13, 2021Apr 13, 2021

• chip_snakemake

  Public
  Snakemake pipeline for ChIP analysis

  R

  •1•0•0•0•Updated Oct 13, 2020Oct 13, 2020

• trip

  Public
  snakemake pipelines for TRIP analysis

  Python

  •0•0•0•0•Updated Oct 6, 2020Oct 6, 2020

• meta_gene_plots

  Public
  R

  •0•0•0•0•Updated Oct 5, 2020Oct 5, 2020

• Lamina_CellCycleDynamics

  Public
  Scripts from the manuscript on "Cell cycle dynamics of lamina associated DNA"

  HTML

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated Jun 4, 2020Jun 4, 2020

• LAD_rewiring

  Public
  Scripts used in the LAD rewiring paper by Laura Brueckner et al

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 10, 2019Dec 10, 2019

• DSB_Repair_Kinetics

  Public
  HTML

  •0•1•0•0•Updated Oct 21, 2019Oct 21, 2019

• SuRE-ms-scripts

  Public
  HTML

  •0•0•0•0•Updated Oct 21, 2019Oct 21, 2019

• Promoters_in_LADs

  Public
  HTML

  •0•2•0•0•Updated Oct 21, 2019Oct 21, 2019