Repositories list

• eg3

  Public
  WashU Epigenome Browser (3rd generation, since 2025)

  data-visualizationwashu-epigenome-browserepigenome

  TypeScript

  •

  Other

  •1•7•13•0•Updated Aug 15, 2025Aug 15, 2025

• cig-pipelines

  Public
  WDL

  •0•1•0•0•Updated Aug 13, 2025Aug 13, 2025

• embed-eg3

  Public
  Embed the 3rd generation of the WashU Epigenome Browser

  TypeScript

  •1•0•0•0•Updated Aug 3, 2025Aug 3, 2025

• twlab

  Public
  website code

  SCSS

  •0•1•0•0•Updated Jul 27, 2025Jul 27, 2025

• encode-dcc-hic-pipeline

  Public
  HiC uniform processing pipeline

  WDL

  •

  MIT License

  •24•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• smaht-web

  Public
  web portal for smaht project

  Astro

  •

  MIT License

  •0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• ZilanXin_ELN

  Public
  Electronic Lab Notebook of Zilan Xin

  0•0•0•0•Updated Jun 16, 2025Jun 16, 2025

• Ixchel

  Public
  Python

  •0•3•1•0•Updated May 27, 2025May 27, 2025

• methylGrapher

  Public
  Methylation analysis pipeline for genome graph

  methylationalignmentwgbs+ 1genome-graph

  Python

  •

  MIT License

  •1•12•1•0•Updated May 25, 2025May 25, 2025

• EyeEpigenome

  Public
  Web portal for the Eye Epigenomes in human

  eyeepigenomics

  TypeScript

  •0•0•0•0•Updated Apr 24, 2025Apr 24, 2025

• BRFG

  Public
  HTML

  •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

• igvf-catalog-docs

  Public
  MDX

  •0•1•0•0•Updated Dec 17, 2024Dec 17, 2024

• Repeat-Browser

  Public
  A web-based visualizing tool for repeat analysis.

  JavaScript

  •0•1•0•0•Updated Nov 25, 2024Nov 25, 2024

• ReferenceAlignmentBias

  Public
  Python

  •0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

• ENCODE_TE

  Public
  Various code for "Regulatory Transposable Elements in the Encyclopedia of DNA Elements"

  Python

  •

  MIT License

  •0•2•0•0•Updated Jul 25, 2024Jul 25, 2024

• epitherapy_induced_antigen_GBM

  Public
  Python

  •1•3•0•0•Updated Jun 16, 2024Jun 16, 2024

• Repeat-Browser_data_processing

  Public
  This repo provides a data processing pipeline for the WashU Repeat Browser.

  C

  •0•0•0•0•Updated May 31, 2024May 31, 2024

• eg-react

  Public
  The new WashU Epigenome Browser

  JavaScript

  •

  Other

  •32•0•0•0•Updated Sep 7, 2023Sep 7, 2023

• LRCAGE

  Public
  Python

  •

  MIT License

  •1•2•0•0•Updated Jul 22, 2023Jul 22, 2023

• TEProf2Paper

  Public
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data

  Python

  •

  Other

  •7•27•7•0•Updated May 5, 2023May 5, 2023

• comparative-browser-landing-page

  Public
  Svelte

  •1•0•0•0•Updated Feb 23, 2023Feb 23, 2023

• novel3dte

  Public
  Code associated with "Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes " by Choudhary and Quaid et. al

  Python

  •0•1•0•0•Updated Jan 13, 2023Jan 13, 2023

• .github

  Public
  0•0•0•0•Updated Nov 22, 2022Nov 22, 2022

• repeatbrowser

  Public
  JavaScript

  •1•2•0•0•Updated May 21, 2022May 21, 2022

• zebrafish_TE_epignome

  Public
  Shell

  •2•1•0•0•Updated May 20, 2022May 20, 2022

• virusbrowser

  Public
  HTML

  •7•4•33•1•Updated Dec 31, 2021Dec 31, 2021

• washu-comparative-gateway

  Public
  JavaScript

  •0•0•0•0•Updated Oct 3, 2021Oct 3, 2021

• cell-div-fin-reg

  Public
  Analysis code used in Cellular diversity of the regenerating caudal fin

  R

  •

  MIT License

  •2•1•0•0•Updated Apr 26, 2021Apr 26, 2021

• TE_expression_in_scRNAseq

  Public
  R

  •

  MIT License

  •6•3•0•0•Updated Nov 15, 2020Nov 15, 2020

• indel_epi_landscape

  Public
  pipeline and script for human-chimp sv affecting cis regulatory elements

  Python

  •2•0•0•0•Updated Sep 15, 2020Sep 15, 2020