Skip to content

@szczurek-lab Ewa Szczurek lab

Change the repository type filter

All

    Repositories list

    26 repositories

    • DelSIEVE_analysis

      Public
      Reproducible benchmarking and real data analysis of SIEVE.
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Aug 5, 2025Aug 5, 2025

    • DelSIEVE_benchmark_pipeline

      Public
      Benchmarking framework for DelSIEVE.
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Aug 5, 2025Aug 5, 2025

    • DelSIEVE_simulator

      Public
      The simulator for DelSIEVE.
      C
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Aug 5, 2025Aug 5, 2025

    • DelSIEVE

      Public
      Java
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Aug 4, 2025Aug 4, 2025

    • FACTM

      Public
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Feb 25, 2025Feb 25, 2025

    • ST-Assign

      Public
      ST-Assign
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 22, 2025Jan 22, 2025

    • ClonalGE

      Public
      Python
      •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • hydramp

      Public
      HydrAMP: a deep generative model for antimicrobial peptide discovery
      drug-discoverymimuwantimicrobial-peptidesuniversity-of-warsawgenerative-modelsantimicrobial-resistance
      Jupyter Notebook
      •
      MIT License
      •14•51•2•0•Updated Nov 26, 2024Nov 26, 2024

    • RetMol

      Public
      A new retrieval-based framework for controllable molecule generation.
      Python
      •
      Other
      •5•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • CaClust

      Public
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 30, 2024Sep 30, 2024

    • SIEVE

      Public
      Joint inference of single-nucleotide variants and cell phylogeny from scDNA-seq.
      Java
      •
      GNU General Public License v3.0
      •1•4•1•0•Updated Jun 9, 2024Jun 9, 2024

    • DataFilter

      Public
      Selecting candidate single-nucleotide variant sites with read counts for SIEVE.
      C++
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Jun 8, 2024Jun 8, 2024

    • Tumoroscope

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•4•1•0•Updated Jan 30, 2024Jan 30, 2024

    • condot

      Public
      Supervised Training of Conditional Monge Maps
      Jupyter Notebook
      •
      MIT License
      •5•0•0•0•Updated Oct 30, 2023Oct 30, 2023

    • Celloscope

      Public
      Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•5•1•0•Updated Sep 13, 2023Sep 13, 2023

    • qupath-spot-utils

      Public
      Scripts for processing microarray spots in QuPath
      Groovy
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Sep 10, 2023Sep 10, 2023

    • st_read_counter

      Public
      Counting the reads over selected mutations in ST data
      Python
      •0•1•0•0•Updated Sep 2, 2023Sep 2, 2023

    • cellot_script

      Public
      Learning Single-Cell Perturbation Responses using Neural Optimal Transport
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•0•0•0•Updated Feb 21, 2023Feb 21, 2023

    • SIEVE_benchmark_pipeline

      Public
      Benchmarking framework for SIEVE.
      Python
      •0•3•0•0•Updated Dec 30, 2022Dec 30, 2022

    • SIEVE_analysis

      Public
      Reproducible benchmarking and real data analysis of SIEVE.
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 1, 2022Nov 1, 2022

    • SIEVE_simulator

      Public
      The simulator for SIEVE.
      C
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 31, 2022Oct 31, 2022

    • slidePat

      Public
      slidePat includes Synthetic Lethality tests exprSL, SoF, SurvLRT and iSurvLRT and is part of SLIDE-VIP: a comprehensive, cell line- and patient-based framework for synthetic lethality prediction in DNA damage repair, chromatin remodeling and cell cycle
      R
      •0•0•0•0•Updated Oct 31, 2022Oct 31, 2022

    • CONET

      Public
      Jupyter Notebook
      •
      Other
      •2•2•1•0•Updated Oct 19, 2022Oct 19, 2022

    • VADEERS

      Public
      The implementation for VADEERS
      Python
      •0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

    • slideCell

      Public
      slideCell includes Synthetic Lethality tests SPID and SPEA and is part of SLIDE-VIP: a comprehensive, cell line- and patient-based framework for synthetic lethality prediction in DNA damage repair, chromatin remodeling and cell cycle
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 15, 2022Jun 15, 2022

    • lso

      Public
      Python
      •
      MIT License
      •0•0•17•1•Updated Mar 21, 2022Mar 21, 2022