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    20 repositories

    • HLA-DP_IP-divergence_score

      Public
      R code for the HLA-DPB1 immunopeptidome mismatch scores
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Aug 18, 2025Aug 18, 2025

    • CauseSpecCovarMI

      Public
      Code and supplementary materials for the manuscript "Multiple imputation for cause-specific Cox models: assessing methods for estimation and prediction" (2022, Statistical Methods in Medical Research)
      missing-datamicecox-modelmultiple-imputationcompeting-risks
      R
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Aug 13, 2025Aug 13, 2025

    • ImmuneReconstJM

      Public
      Code and supplementary materials for the manuscript "Joint models quantify associations between T-cell kinetics and allo-immunological events after allogeneic stem cell transplantation and subsequent donor lymphocyte infusion" (2023, Frontiers in Immunology)
      competing-risksjoint-modelshaematology
      TeX
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      GNU General Public License v3.0
      •0•2•0•0•Updated Aug 13, 2025Aug 13, 2025

    • ReviewHaemaMissing

      Public
      Code and supplementary materials for the manuscript "Handling missing covariate data in clinical studies in haematology" (2023, Best Practice & Research Clinical Haematology)
      micecox-modelmultiple-imputationhaematology
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Aug 13, 2025Aug 13, 2025

    • FineGrayDGM

      Public
      Code accompanying the manuscript "Why you should avoid using multiple Fine–Gray models: insights from (attempts at) simulating proportional subdistribution hazards data" (2024, JRSS-A)
      data-generationcompeting-risksfine-gray-modelcumulative-incidence
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Aug 13, 2025Aug 13, 2025

    • FineGrayCovarMI

      Public
      Code repository for the manuscript 'Multiple imputation of missing covariates when using the Fine–Gray model' (2025, Statistics in Medicine)
      micemultiple-imputationcompeting-risksfine-gray-model
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Aug 13, 2025Aug 13, 2025

    • AdvancedSurvival-course

      Public
      Landing site for course "Advanced Survival Analysis", given in Leiden (the Netherlands).
      CSS
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      Other
      •0•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • CausalMultistate

      Public
      Code accompanying the manuscript "Extending multistate models with g-computation to evaluate treatment delay"
      R
      •0•2•0•0•Updated Feb 17, 2025Feb 17, 2025

    • CondSurvivalBenefit

      Public
      R code repository for the paper "Estimating conditional survival benefit for the allocation of scarce resources".
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Jan 31, 2025Jan 31, 2025

    • CureModels

      Public
      R
      •0•1•0•0•Updated Jan 10, 2025Jan 10, 2025

    • AdjCuminc

      Public
      Performing covariate adjustment on cumulative incidence curves for competing risks data, and comparing various approaches to covariate adjustment via simulation.
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 30, 2024Nov 30, 2024

    • ValidationCompRisks

      Public
      Code repository for the manuscript 'Validation of the performance of competing risks prediction models: a guide through modern methods' (2023, BMJ)
      predictioncompeting-risksmodel-validation
      R
      •
      GNU General Public License v3.0
      •12•27•0•0•Updated Sep 17, 2024Sep 17, 2024

    • SIRsurvival

      Public
      0•1•0•0•Updated May 1, 2024May 1, 2024

    • DynamicPrediction-book

      Public
      Code and datasets used in book "Dynamic Prediction in Clinical Survival Analysis" by Hans van Houwelingen and Hein Putter (2011)
      R
      •0•9•1•0•Updated Apr 2, 2024Apr 2, 2024

    • Validation_Under_Interventions

      Public
      Performance evaluation of predictions under interventions using longitudinal observational data
      R
      •2•5•0•0•Updated Nov 13, 2023Nov 13, 2023

    • CovidPredictimands

      Public
      Code repository for the paper "The disconnect between development and intended use of clinical prediction models for Covid-19: a systematic review and real-world data illustration"
      R
      •0•3•0•0•Updated Jun 15, 2022Jun 15, 2022

    • Benchmarking

      Public
      Benchmarking survival outcomes: A funnel plot for survival data
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Dec 16, 2021Dec 16, 2021

    • Landmarking2.0

      Public
      Code for the paper "Landmarking 2.0: Bridging the gap between joint models and landmarking" by Hein Putter & Hans van Houwelingen
      1•7•0•0•Updated Mar 13, 2021Mar 13, 2021

    • FrailtyTutorial

      Public
      R-code and output of all analyses in Balan & Putter (2020): A tutorial in frailty models, Statistical Methods in Medical Research, vol. 29(11), 3424-3454, https://journals.sagepub.com/doi/full/10.1177/0962280220921889.
      HTML
      •0•8•0•0•Updated Feb 9, 2021Feb 9, 2021

    • FG-TotalFailureProbability

      Public
      Code and results of Section 4 of the paper "Fine-Gray subdistribution hazard models to simultaneously estimate the absolute risk of different event types: cumulative total failure probability may exceed 1", by Peter Austin, Ewout Steyerberg & Hein Putter
      competing-risksfine-gray-model
      R
      •0•4•0•0•Updated Jan 14, 2021Jan 14, 2021