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    113 repositories

    • pheweb

      Public
      A tool to build a website to browse hundreds or thousands of GWAS.
      Python
      •
      MIT License
      •75•185•39•2•Updated Sep 11, 2025Sep 11, 2025

    • bravo_data_prep

      Public
      Work flows and tools to create data that backs the BRAVO API.
      C++
      •
      MIT License
      •2•0•8•0•Updated Sep 9, 2025Sep 9, 2025

    • ansible-bravo-deploy

      Public
      Anisble deployment roles and playbook for BRAVO API and UI
      Jinja
      •1•0•1•0•Updated Aug 28, 2025Aug 28, 2025

    • bravo-infrastructure

      Public
      Provisioning and deployment of example BRAVO vignette.
      HCL
      •0•0•1•0•Updated Aug 26, 2025Aug 26, 2025

    • bravo_vue

      Public
      BRAVO's Vue JS based UI.
      Vue
      •0•0•13•16•Updated Aug 19, 2025Aug 19, 2025

    • bravo_api

      Public
      Server side data processing and retrieval endpoints for BRAVO
      Python
      •
      MIT License
      •2•1•16•0•Updated Aug 18, 2025Aug 18, 2025

    • savant

      Public
      Sparse Allele Vector AssociatioN Tool
      C++
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Aug 15, 2025Aug 15, 2025

    • cloudgene3

      Public
      A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
      Java
      •
      MIT License
      •7•0•0•0•Updated Aug 7, 2025Aug 7, 2025

    • RNA-seq-tracking

      Public
      Tracks TOPMed OMICS qc progress
      PHP
      •0•1•0•0•Updated Jul 10, 2025Jul 10, 2025

    • locuszoom-api

      Public
      Flask server code for LocusZoom APIs
      Python
      •
      MIT License
      •3•1•0•0•Updated Jul 7, 2025Jul 7, 2025

    • Minimac4

      Public
      C++
      •
      GNU General Public License v3.0
      •25•66•47•2•Updated Jun 4, 2025Jun 4, 2025

    • locuszoom

      Public
      A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
      gwaslocuszoomgwas-toolsgwas-summary-statisticslocuszoom-plot
      JavaScript
      •
      MIT License
      •30•162•13•4•Updated May 9, 2025May 9, 2025

    • localzoom

      Public
      Make interactive LocusZoom plots from a local GWAS file
      gwas-cataloggwas-pipelinegwas-toolsgwas-summary-statisticslocuszoom-plotgwaslocuszoom
      Vue
      •
      MIT License
      •5•9•0•9•Updated May 9, 2025May 9, 2025

    • locuszoom-hosted

      Public
      A web service to upload and share GWAS results with LocusZoom.js
      gwaslocuszoomgwas-pipelinegwas-toolsgwas-summary-statisticslocuszoom-plot
      Python
      •
      MIT License
      •0•1•13•11•Updated May 8, 2025May 8, 2025

    • zorp

      Public
      A simple GWAS parser + CLI
      gwaslocuszoomgwas-pipelinegwas-toolsgwas-summary-statisticspythonconversionparsers
      Python
      •
      MIT License
      •0•1•2•0•Updated May 7, 2025May 7, 2025

    • filefetcher

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 6, 2025May 6, 2025

    • encore

      Public
      Encore Analysis Server
      Python
      •
      GNU Affero General Public License v3.0
      •6•13•0•5•Updated May 1, 2025May 1, 2025

    • LDServer

      Public
      Fast API server for calculating linkage disequilibrium
      genetics
      Linker Script
      •
      GNU General Public License v3.0
      •2•19•3•4•Updated Apr 24, 2025Apr 24, 2025

    • ruth

      Public
      Robust Unified Hardy-Weinberg Equilibrium Test
      C++
      •
      Apache License 2.0
      •2•6•7•0•Updated Apr 8, 2025Apr 8, 2025

    • terraform-aws-imputation-server

      Public
      A set of Terraform Modules for deploying an imputation server on AWS
      awsbioinformaticsterraformterraform-modules
      HCL
      •
      Apache License 2.0
      •2•1•0•0•Updated Mar 26, 2025Mar 26, 2025

    • imputationserver2

      Public
      Imputation Server 2 workflow to facilitate genotype imputation at scale.
      Nextflow
      •
      MIT License
      •11•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • imputationserver

      Public
      TOPMED Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
      Java
      •
      GNU Affero General Public License v3.0
      •49•6•0•0•Updated Jan 7, 2025Jan 7, 2025

    • topmed_variant_calling

      Public
      C++
      •
      Apache License 2.0
      •4•23•4•0•Updated Nov 27, 2024Nov 27, 2024

    • nullmetal

      Public
      C++
      •0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • raremetal

      Public
      A flexible tool for meta-analysis
      gwas
      C++
      •8•9•29•1•Updated Jul 31, 2024Jul 31, 2024

    • nextflow-sc_dge

      Public
      R
      •
      MIT License
      •5•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • cloudgene

      Public
      A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
      Java
      •
      GNU Affero General Public License v3.0
      •20•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • METAL

      Public
      Meta-analysis of genomewide association scans
      C++
      •
      Other
      •12•60•24•1•Updated Jul 18, 2024Jul 18, 2024

    • vuptool

      Public
      Tool for detecting and handling genomic variant under methylation probes
      C++
      •
      Mozilla Public License 2.0
      •0•0•0•0•Updated Jul 7, 2024Jul 7, 2024

    • demuxlet

      Public
      Genetic multiplexing of barcoded single cell RNA-seq
      C++
      •
      Apache License 2.0
      •26•129•72•3•Updated Jul 1, 2024Jul 1, 2024