Repositories list

• cumulus-library

  Public
  A framework for designing, executing, and distributing SQL queries packaged as "studies", e.g., for quality monitoring, clinical research, or public health

  bioinformaticsfhirbdf-toolbox

  Python

  •

  Apache License 2.0

  •2•5•40•1•Updated Oct 31, 2025Oct 31, 2025

• bulk-submit-consumer

  Public
  TypeScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 31, 2025Oct 31, 2025

• cumulus-etl

  Public
  Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis

  nlpbioinformaticsfhir+ 1bdf-toolbox

  Python

  •

  Apache License 2.0

  •4•19•17•3•Updated Oct 30, 2025Oct 30, 2025

• smart-fetch

  Public

  smart-on-fhir/smart-fetch’s past year of commit activity
  Extract FHIR data from your EHR easily and completely

  fhirsmart-on-fhirfhir-client+ 2bulk-fhirbdf-toolbox

  Python

  •

  Apache License 2.0

  •1•4•7•0•Updated Oct 29, 2025Oct 29, 2025

• bulk-submit-provider

  Public
  TypeScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025

• kidney-transplant-llm

  Public
  Kidney Transplant LLM Prompts

  bdf-toolbox

  Python

  •

  Apache License 2.0

  •0•0•15•1•Updated Oct 23, 2025Oct 23, 2025

• cumulus-library-kidney-transplant

  Public
  bdf-toolbox

  Python

  •0•0•16•0•Updated Oct 22, 2025Oct 22, 2025

• cumulus-library-loinc

  Public
  A Cumulus library study for deploying the LOINC coding system to an athena database

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 22, 2025Oct 22, 2025

• client-js-examples

  Public
  Contains examples of how to use the client-js library

  HTML

  •6•1•0•5•Updated Oct 21, 2025Oct 21, 2025

• cumulus-fhir-support

  Public
  FHIR support code for the Cumulus project

  bioinformaticsfhir

  Python

  •

  Apache License 2.0

  •0•1•2•0•Updated Oct 20, 2025Oct 20, 2025

• cumulus-aggregator

  Public
  Python

  •

  Apache License 2.0

  •1•3•21•0•Updated Oct 14, 2025Oct 14, 2025

• cumulus-library-data-metrics

  Public
  A data metrics study for the Cumulus project

  bdf-toolbox

  Jinja

  •

  Apache License 2.0

  •2•4•14•2•Updated Oct 13, 2025Oct 13, 2025

• cumulus-kidney-transplant-examples

  Public
  Synthetic examples for kidney transplant study

  Python

  •0•1•0•0•Updated Oct 8, 2025Oct 8, 2025

• chart-review

  Public
  Measure agreement between chart reviewers.

  bioinformaticslabel-studio

  Python

  •

  Apache License 2.0

  •1•6•10•1•Updated Oct 7, 2025Oct 7, 2025

• cumulus

  Public
  Clinical investigation at population scale.

  Shell

  •

  Apache License 2.0

  •0•6•2•0•Updated Oct 6, 2025Oct 6, 2025

• client-js

  Public
  JavaScript client for FHIR

  TypeScript

  •

  Other

  •232•327•27•1•Updated Sep 29, 2025Sep 29, 2025

• sample-bulk-fhir-datasets

  Public
  Sample bulk export results of various sizes, for testing tools and workflows

  Shell

  •

  Apache License 2.0

  •3•26•1•0•Updated Sep 17, 2025Sep 17, 2025

• cumulus-app

  Public
  bdf-toolbox

  TypeScript

  •

  Apache License 2.0

  •0•2•9•0•Updated Sep 16, 2025Sep 16, 2025

• good-neighbor

  Public
  Ruby

  •0•2•0•0•Updated Aug 20, 2025Aug 20, 2025

• infectious-symptoms-llm-study

  Public
  Detecting Infectious Respiratory Disease Symptoms using LLMs

  Python

  •

  Apache License 2.0

  •0•0•1•0•Updated Aug 12, 2025Aug 12, 2025

• client-py

  Public
  Python SMART on FHIR client

  fhirsmart-on-fhirfhir-client+ 1fhir-parser

  Python

  •

  Other

  •222•663•23•0•Updated Aug 1, 2025Aug 1, 2025

• bulk-data-implementations

  Public
  listing of bulk FHIR client implementations

  Apache License 2.0

  •8•17•0•0•Updated Jul 31, 2025Jul 31, 2025

• cumulus-library-catalog

  Public
  Browse hierarchies of pre-calculated counts for ICD10 Diagnosis, MEDRT/RxNorm medications, etc.

  bdf-toolbox

  Python

  •

  Apache License 2.0

  •1•1•0•0•Updated Jul 23, 2025Jul 23, 2025

• cumulus-library-umls

  Public
  A Unified Medical Language System® Metathesaurus study for the Cumulus project

  bdf-toolbox

  Python

  •1•1•1•0•Updated Jul 22, 2025Jul 22, 2025

• IBD-Case-Conference-Demo

  Public
  JavaScript

  •0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

• sample-patients-prom

  Public archive
  Provisional Quarterly Patient Reported Outcome Measures (PROMs) in England - April 2015 to March 2016, November 2016 release

  JavaScript

  •

  Other

  •4•6•0•0•Updated Jul 2, 2025Jul 2, 2025

• bulk-match-provider

  Public
  Bulk Match Provider

  TypeScript

  •

  Apache License 2.0

  •1•3•0•0•Updated Jun 25, 2025Jun 25, 2025

• cumulus-data-metrics-reporting

  Public
  Visualizations for FHIR data quality and characterization metrics generated with cumulus-library-data-metrics

  Python

  •

  Other

  •1•1•0•0•Updated Jun 24, 2025Jun 24, 2025

• crawler-scripts

  Public archive
  Deprecated by smart-fetch

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated May 23, 2025May 23, 2025

• rapid-elastic

  Public
  Rapidly query clinical notes in Elasticsearch for mentions of diseases

  Python

  •

  Apache License 2.0

  •1•1•4•0•Updated May 21, 2025May 21, 2025