Repositories list

• cartloader

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

• ficture

  Public
  Python

  •

  Other

  •5•37•10•0•Updated Aug 3, 2025Aug 3, 2025

• spatula

  Public
  A C++ Tool for Spatial Transcriptomics

  C++

  •

  Apache License 2.0

  •0•3•2•0•Updated Jul 21, 2025Jul 21, 2025

• cartostore

  Public
  Cross-Platform Repository for High-resolution Spatial Transcriptomics Datasets

  MIT License

  •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

• NovaScope

  Public
  The pipeline to process Novaseq dataset, from fastq to nge.

  bioinformatics-pipelinesnakemake-workflowspatial-transcriptomics

  Python

  •

  Apache License 2.0

  •0•5•1•0•Updated Feb 17, 2025Feb 17, 2025

• NovaScope-exemplary-downstream-analysis

  Public
  Exemplary downstream analysis for NovaScope

  HTML

  •

  Apache License 2.0

  •0•1•0•0•Updated Aug 30, 2024Aug 30, 2024

• historef

  Public
  automated referencing tool between Seq-Scope sequence data and H&E histology image

  Python

  •0•1•0•0•Updated May 28, 2024May 28, 2024

• STARxy

  Public
  Modified version of STAR for spatial transcriptomics

  C++

  •

  MIT License

  •531•0•0•0•Updated May 28, 2024May 28, 2024

• STtools

  Public
  R

  •7•10•0•0•Updated Jul 15, 2022Jul 15, 2022