Skip to content

@pyranges pyranges

Change the repository type filter

All

    Repositories list

    14 repositories

    • pyranges_1.x

      Public
      PyRanges as a DataFrame subclass.
      Python
      •
      MIT License
      •4•18•7•0•Updated Aug 22, 2025Aug 22, 2025

    • ruranges

      Public
      Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library
      Rust
      •2•10•2•0•Updated Aug 22, 2025Aug 22, 2025

    • pyranges_plot

      Public
      Gene visualization package for dataframe objects generated with PyRanges
      Python
      •
      MIT License
      •3•3•5•0•Updated Aug 20, 2025Aug 20, 2025

    • benchmarks

      Public
      Python
      •1•0•0•1•Updated Jul 19, 2025Jul 19, 2025

    • ncls

      Public
      NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.
      pythonnumpyinterval-treenclsoverlap-queries
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •23•223•12•4•Updated Jul 4, 2025Jul 4, 2025

    • sorted_nearest

      Public
      Cython helper library for pyranges. Find nearest interval in linear time at C speed.
      Cython
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•2•2•Updated Jun 9, 2025Jun 9, 2025

    • bamread

      Public
      Bam to Pandas DataFrame, quickly
      Cython
      •8•13•3•2•Updated May 10, 2025May 10, 2025

    • pyrle

      Public
      Numerical Run Length Encoding and Arithmetic in Cython
      Python
      •
      MIT License
      •3•18•4•2•Updated Mar 18, 2025Mar 18, 2025

    • pyranges

      Public
      Performant Pythonic GenomicRanges
      pythongenomicspandasdata-structuresgenomicranges
      Python
      •
      MIT License
      •50•484•85•6•Updated Mar 14, 2025Mar 14, 2025

    • bwread

      Public
      Read bigwig into pyranges or dataframe
      Cython
      •0•5•0•1•Updated Sep 3, 2024Sep 3, 2024

    • pyranges_example_data

      Public
      Example data for pyranges
      0•0•0•0•Updated Dec 16, 2023Dec 16, 2023

    • pyranges_db

      Public
      pyranges add-on to fetch annotation data from UCSC, gencode and ensembl
      Python
      •0•0•0•0•Updated Feb 3, 2020Feb 3, 2020

    • fishers_exact_test

      Public
      Fishers Exact Test for Python (Cython)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •23•0•0•0•Updated Oct 2, 2019Oct 2, 2019

    • pyranges.github.io

      Public
      PyRanges docs
      R
      •0•0•0•0•Updated Oct 25, 2018Oct 25, 2018