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    37 repositories

    • BGlib

      Public
      Band Excitation and General Mode microscopy analytics software
      Jupyter Notebook
      •
      MIT License
      •5•4•8•2•Updated Sep 12, 2025Sep 12, 2025

    • atomStats

      Public
      Getting all relevant statistics from atomic resolution images
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 12, 2025Sep 12, 2025

    • pycroscopy

      Public
      Scientific analysis of nanoscale materials imaging data
      visualizationatommachine-learningstatisticsafmsignal-processingstmfftelectron-microscopystem
      Jupyter Notebook
      •
      MIT License
      •74•269•49•1•Updated Sep 12, 2025Sep 12, 2025

    • pyTEMlib

      Public
      TEM data quantification library through a model-based approach
      Jupyter Notebook
      •
      MIT License
      •10•19•2•0•Updated Sep 12, 2025Sep 12, 2025

    • sidpy

      Public
      Python utilities for storing, processing, and visualizing spectroscopic and imaging data
      Jupyter Notebook
      •
      MIT License
      •16•12•37•0•Updated Sep 12, 2025Sep 12, 2025

    • SciFiReaders

      Public
      Tools for extracting data and metadata from scientific data files
      Jupyter Notebook
      •
      MIT License
      •14•13•17•1•Updated Sep 11, 2025Sep 11, 2025

    • pyAutoMic

      Public
      AI-assisted intelligent realtime microscopy
      Python
      •
      MIT License
      •1•8•3•0•Updated Sep 6, 2025Sep 6, 2025

    • pyNSID

      Public
      Utilities for facilitating the storage, access, and visualization of NSID data
      Jupyter Notebook
      •
      MIT License
      •3•3•7•0•Updated Jun 27, 2025Jun 27, 2025

    • SciFiDatasets

      Public
      Datasets for testing and demonstration purposes
      MIT License
      •4•0•0•1•Updated Jun 26, 2025Jun 26, 2025

    • atomai

      Public
      Deep and Machine Learning for Microscopy
      materialsjupyter-notebookensemble-learningelectron-microscopymaterials-sciencemicroscopyimagingsemantic-segmentationfully-convolutional-networksmultivariate-analysis
      Python
      •
      MIT License
      •40•212•8•3•Updated Jun 24, 2025Jun 24, 2025

    • pycrosGui

      Public
      A Gui framework for pycroscopy tools
      Python
      •
      MIT License
      •0•1•0•0•Updated Apr 20, 2025Apr 20, 2025

    • arems25

      Public
      AReMS Tutorial 2025
      Jupyter Notebook
      •0•1•0•0•Updated Mar 13, 2025Mar 13, 2025

    • pyUSID

      Public
      Framework for storing, visualizing, and processing Universal Spectroscopic and Imaging Data (USID)
      dataparallel-computinghdf5imagingspectroscopy
      Python
      •
      MIT License
      •18•26•17•1•Updated Mar 7, 2025Mar 7, 2025

    • nomad

      Public
      Nomad for pycroscopy
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 2, 2025Jan 2, 2025

    • stemtool

      Public
      A single package for analyzing atomic resolution STEM, 4D-STEM and STEM-EELS datasets, along with basic STEM simulation functionality
      electron-microscopyeels4d-stem
      Python
      •
      MIT License
      •3•18•4•0•Updated Dec 21, 2024Dec 21, 2024

    • DTMicroscope

      Public
      Digital Twin Microscope
      Jupyter Notebook
      •
      MIT License
      •6•17•0•0•Updated Dec 17, 2024Dec 17, 2024

    • ML_Summer_Course

      Public
      This is a repository setup for the Machine Learning in Microscopy Virtual Summer School
      Python
      •8•0•0•0•Updated Jul 2, 2023Jul 2, 2023

    • ferroschool

      Public
      FerroSchool Winter 2022 in Calgary
      Jupyter Notebook
      •0•0•0•0•Updated Dec 7, 2022Dec 7, 2022

    • scifireaders-feedstock

      Public
      A conda-smithy repository for scifireaders.
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • pytemlib-feedstock

      Public
      A conda-smithy repository for pytemlib.
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • sidpy-feedstock

      Public
      A conda-smithy repository for sidpy.
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • pyusid-feedstock

      Public
      A conda-smithy repository for pyusid.
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated Mar 25, 2022Mar 25, 2022

    • pycroscopy-feedstock

      Public
      A conda-smithy repository for pycroscopy.
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated Mar 25, 2022Mar 25, 2022

    • MRS2021

      Public
      Notebooks for MRS2021 tutorial
      Jupyter Notebook
      •
      MIT License
      •2•4•0•0•Updated Nov 28, 2021Nov 28, 2021

    • SPM_ML_School_2021

      Public
      Virtual School – “Machine Learning and Automated Experiment in Scanning Probe Microscopy" at ORNL, October 4-7, 2021
      Jupyter Notebook
      •7•10•0•0•Updated Oct 7, 2021Oct 7, 2021

    • Intro_to_pycroscopy

      Public
      Introduction to the Pycroscopy Ecosystem
      Jupyter Notebook
      •0•3•0•0•Updated Aug 13, 2021Aug 13, 2021

    • USID

      Public
      Universal Spectroscopy and Imaging Data
      Jupyter Notebook
      •
      MIT License
      •1•0•3•0•Updated May 17, 2021May 17, 2021

    • AICrystallographer

      Public
      Here, we will upload our deep/machine learning models and 'workflows' (such as AtomNet, DefectNet, SymmetryNet, etc) that aid in automated analysis of atomically resolved images
      Jupyter Notebook
      •14•36•0•0•Updated May 7, 2021May 7, 2021

    • AISTEM_WORKSHOP_2020

      Public
      Materials for "AI for Atoms: How to Machine Learn STEM" Workshop
      Jupyter Notebook
      •4•19•0•0•Updated Dec 10, 2020Dec 10, 2020

    • CNMS_ML_in_MS_Workshop_2018

      Public
      CNMS User Meeting Workshop 2018: Machine learning in Materials Science with Python
      Jupyter Notebook
      •1•6•0•0•Updated Mar 4, 2020Mar 4, 2020