Repositories list

• p53_docking

  Public
  Project code for Chris Morris collab

  Python

  •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

• PFP

  Public
  Python

  •0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

• psipred_react

  Public
  A react port of the psipred_webserver dynamic pages

  JavaScript

  •0•1•1•0•Updated Jul 10, 2025Jul 10, 2025

• psipred

  Public
  PSIPRED Protein Secondary Structure Predictor

  proteinssecondary-structure-prediction

  Java

  •

  Other

  •13•57•1•0•Updated Jul 3, 2025Jul 3, 2025

• ansible_rocky

  Public
  new, united ansible repo for rocky machines

  Shell

  •0•0•0•0•Updated Jun 19, 2025Jun 19, 2025

• ted-tools

  Public
  ML toolset for creating TED: The Encyclopedia of Domains

  Python

  •

  MIT License

  •5•21•3•1•Updated May 29, 2025May 29, 2025

• merizo_search

  Public
  Fast protein domain structure embedding+search tool

  Python

  •

  GNU General Public License v3.0

  •3•25•1•0•Updated May 22, 2025May 22, 2025

• Merizo

  Public
  Fast and accurate protein domain segmentation using Invariant Point Attention

  Python

  •

  GNU General Public License v3.0

  •7•40•1•0•Updated May 22, 2025May 22, 2025

• blast_cache

  Public
  PSIBLAST and BLAST cache

  devopsblastblast-cache

  Python

  •

  GNU General Public License v3.0

  •0•0•3•3•Updated May 21, 2025May 21, 2025

• GsRCL

  Public
  repository for the GsRCL cell type identifier

  Python

  •0•0•0•0•Updated May 20, 2025May 20, 2025

• server_update

  Public
  Scripts and bits for the new server updating

  C

  •0•0•0•0•Updated May 1, 2025May 1, 2025

• cgdms

  Public
  Differentiable molecular simulation of proteins with a coarse-grained potential

  automatic-differentiationproteinforce-field+ 2potentialcoarse-grained

  Python

  •

  MIT License

  •4•56•0•0•Updated Apr 3, 2025Apr 3, 2025

• s4pred

  Public
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

  Python

  •

  GNU General Public License v3.0

  •13•58•1•0•Updated Apr 2, 2025Apr 2, 2025

• memsat-svm-pore

  Public
  The version of memsat-svm that also predicts pore lining residues

  Perl

  •0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

• DMPmetal

  Public
  repository for the DMPmetal metal binding site predictor

  Python

  •0•0•0•0•Updated Mar 20, 2025Mar 20, 2025

• mempack

  Public
  Membrane alpha helix packing and orientation predicrtor

  helix-packingmembrane-proteins

  Perl

  •

  Other

  •1•1•0•0•Updated Feb 18, 2025Feb 18, 2025

• DMPfold2

  Public
  Fast and accurate protein structure prediction

  deep-learningend-to-endmultiple-sequence-alignment+ 1protein-structure-prediction

  Python

  •

  GNU General Public License v3.0

  •14•54•1•1•Updated Jan 17, 2025Jan 17, 2025

• profile_drift_new

  Public
  update for profile drift project

  Python

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• psipred_branding

  Public
  contains all our branding files, logos and info

  0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• hspred

  Public
  Protein-protein interaction hotspot predictor

  proteinsprotein-structurehotspot-prediciton

  Perl

  •

  Other

  •0•3•0•0•Updated Nov 27, 2024Nov 27, 2024

• MemEmbed

  Public
  Membrane protein orientation using knowledge-bases potentials

  membrane-protiensmembrane-orientation

  C++

  •

  Other

  •0•1•0•0•Updated Nov 27, 2024Nov 27, 2024

• metsite

  Public
  Metal ion ligand contact predictor

  prototypemetal-binding-prediction

  C++

  •

  Other

  •1•1•0•0•Updated Nov 27, 2024Nov 27, 2024

• dompred

  Public
  Protein sequence domain predictor

  protein-structureprotein-domains

  Perl

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Nov 25, 2024Nov 25, 2024

• pGenTHREADER

  Public
  Protein fold recognition using strucutal and sequence template threading

  proteinfold-recognition

  C

  •

  Other

  •2•5•1•0•Updated Nov 25, 2024Nov 25, 2024

• disopred

  Public
  Protein structural disorder prediction

  proteinsdisorder-prediction

  C++

  •

  Other

  •8•18•2•0•Updated Nov 21, 2024Nov 21, 2024

• MemSatSVM

  Public
  Membrane helix prediction with SVMs

  membrane-proteinsmembrane-helix-predicionmembrane-topology

  Perl

  •

  Other

  •2•1•0•0•Updated Nov 21, 2024Nov 21, 2024

• analytics_automated

  Public
  Middleware layer for exposing analytics and distributed computing jobs as web services

  Python

  •

  Other

  •4•0•0•0•Updated Aug 18, 2024Aug 18, 2024

• webserver_test_dbs

  Public
  A really tiny slice of the top of a late 2015 uniref90 release, plust BLAST db formatting

  0•0•0•0•Updated Jun 12, 2024Jun 12, 2024

• web_server_scripts

  Public
  Web server helper scripts

  Python

  •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

• biod3

  Public
  Protein annotation web graphics lib

  d3protein-annotation

  JavaScript

  •0•0•0•0•Updated Feb 22, 2024Feb 22, 2024