PNI - Predictive Neuroimaging Lab, University Hospital Essen, Germany

All

24 repositories

pni-lab.github.io
Public
Lab website
myst mystmd pni-lab predictive-neuroscience
3•1•0•0•Updated Jul 22, 2025Jul 22, 2025
fep-attractor-network
Public
Manuscript source: Self-orthogonalizing attractor neural networks emerging from the free energy principle
free-energy-principle active-inference attractor-neural-network self-orthogonalizing
Jupyter Notebook
•3•7•0•0•Updated Jun 5, 2025Jun 5, 2025
RLBF
Public
Reinforcement Learning via Brain Feedback (RLBF)
Python
•
GNU General Public License v3.0
•1•0•0•0•Updated May 27, 2025May 27, 2025
placebo-conditioning-meta-analysis
Public
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated May 23, 2025May 23, 2025
AdaptiveSplitAnalysis
Public
Analysis for the AdaptiveSplit's manuscript.
Jupyter Notebook
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GNU General Public License v3.0
•0•0•0•0•Updated May 20, 2025May 20, 2025
PUMI
Public
PUMI: neuroimaging Pipelines Using Modular workflow Integration
neuroimaging preprocessing dwi nipype resting-state-fmri
Python
•
GNU General Public License v3.0
•0•2•37•1•Updated May 10, 2025May 10, 2025
dwi-replicability
Public
This repository explores the replicability of connectome-based predictive modeling (CPM) and brain-wide association studies (BWAS) using diffusion MRI.
machine-learning image-processing predictive-modeling dwi psychology-questionnaire bwas
Jupyter Notebook
•0•0•0•0•Updated May 8, 2025May 8, 2025
adaptivesplit
Public
External validation of machine learning models with adaptive sample splitting
Jupyter Notebook
•
GNU General Public License v3.0
•0•0•0•0•Updated Jan 20, 2025Jan 20, 2025
nifeatures
Public
Features engineering for neuroimaging data
Jupyter Notebook
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GNU General Public License v3.0
•0•0•0•0•Updated Aug 14, 2024Aug 14, 2024
connattractor
Public
Connectome-based Hopfiled Neural Networks (fcHNN)
fmri functional-connectivity hopfield-neural-network computational-neuroimaging
Jupyter Notebook
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GNU General Public License v3.0
•4•8•0•1•Updated Apr 4, 2024Apr 4, 2024
fmriprep_cluster
Public
Shell
•1•0•3•0•Updated Mar 8, 2024Mar 8, 2024
rpn-subscores
Public
Unsupervised sub-scores of the RPN-signature
0•0•0•0•Updated Nov 14, 2023Nov 14, 2023
ctp-signature
Public
Cortical thickness signature of individual sensitivity to pain
Jupyter Notebook
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Other
•2•0•1•0•Updated Sep 6, 2023Sep 6, 2023
mlconfound
Public
Tools for analyzing and quantifying effects of confounder variables on machine learning model predictions.
predictive-modeling permutation-test confounders conditional-independence python machine-learning
Jupyter Notebook
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GNU General Public License v3.0
•0•7•1•0•Updated Apr 6, 2023Apr 6, 2023
programming_101
Public
This repo holds the course materials for the programming crash course held by the PNI-lab Essen!
0•2•0•0•Updated Feb 23, 2023Feb 23, 2023
atlas_opt_maria
Public
Atlas optimization with pumi (student lab rotation project)
Jupyter Notebook
•0•0•0•0•Updated Feb 20, 2023Feb 20, 2023
old_website
Public
Website of the PNI research lab
HTML
•1•0•0•0•Updated Jan 6, 2023Jan 6, 2023
mlconfound-manuscript
Public
Analysis code and Latex source of the manuscript describing the conditional permutation test of confounding bias in predictive modelling.
machine-learning statistical-tests permutation-test conditional-independence confounder
Jupyter Notebook
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GNU General Public License v3.0
•1•1•0•0•Updated Jul 14, 2022Jul 14, 2022
ALIIAS
Public
Python
•
GNU General Public License v3.0
•1•1•10•0•Updated Jul 6, 2022Jul 6, 2022
.github
Public
README.md for the public organization profile
The Unlicense
•0•0•0•0•Updated Jun 15, 2022Jun 15, 2022
RPN-signature
Public
Supplementary analasys for The Resting-state Pain susceptibility Network signature.
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•8•0•0•1•Updated Jun 15, 2022Jun 15, 2022
predmod_lecture
Public
Jupyter Book "Introduction to predictive modelling"
Jupyter Notebook
•0•0•0•0•Updated Feb 22, 2022Feb 22, 2022
teaching
Public
Python Notebooks for teaching purposes
Jupyter Notebook
•0•0•0•0•Updated Nov 3, 2020Nov 3, 2020
lab-website
Public
source code of the lab website
0•0•0•0•Updated Jul 3, 2020Jul 3, 2020