Repositories list

• sherpas

  Public
  Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences

  virusrecombinationsubtyping+ 5genotypingkmersphylo-kmersancestral-sequencesrecombination-detection

  C++

  •

  MIT License

  •4•9•2•0•Updated Jul 25, 2025Jul 25, 2025

• IPK

  Public
  Inference of phylo-k-mers

  C++

  •

  MIT License

  •1•4•11•1•Updated Jul 25, 2025Jul 25, 2025

• EPIK

  Public
  Alignment-free phylogenetic placement

  C++

  •

  MIT License

  •1•7•1•1•Updated Feb 6, 2025Feb 6, 2025

• PEWO

  Public
  Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees

  benchmarkingmetagenomicsmetabarcoding+ 6taxonomic-classificationphylogenetic-placementphylo-kmersworkflowsnakemakeplacement

  Python

  •

  MIT License

  •9•12•11•1•Updated Jan 31, 2025Jan 31, 2025

• I2L

  Public
  C++

  •0•0•0•0•Updated May 7, 2024May 7, 2024

• RAPPAS

  Public
  Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences

  metagenomicsphylogeneticsmetabarcoding+ 6taxonomic-classificationphylogenetic-placementkmersgenetic-markersplacementphylo-kmers

  Java

  •

  GNU General Public License v3.0

  •3•9•9•0•Updated Dec 20, 2023Dec 20, 2023

• PEWO_java

  Public
  Java tools for PEWO

  Java

  •

  MIT License

  •1•0•1•0•Updated Jul 19, 2023Jul 19, 2023