Repositories list

• sibernetic

  Public
  This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

  C

  •

  Other

  •108•378•27•11•Updated Aug 2, 2025Aug 2, 2025

• CelegansNeuromechanicalGaitModulation

  Public
  C elegans Neuromechanical Gait Modulation Model

  C

  •7•1•0•0•Updated Aug 1, 2025Aug 1, 2025

• OpenWorm

  Public
  Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

  simulationbiologyopenworm+ 1elegans

  Python

  •

  MIT License

  •220•2.9k•41•3•Updated Jul 31, 2025Jul 31, 2025

• CE_locomotion

  Public
  Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer

  C++

  •5•2•7•2•Updated Jul 30, 2025Jul 30, 2025

• Worm3DViewer

  Public
  Test repository for multiple views of the worm in 3D

  Python

  •0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

• c302

  Public
  The c302 framework for generating multiscale network models of C. elegans

  simulationopenworm

  Python

  •

  MIT License

  •26•123•8•1•Updated Jul 30, 2025Jul 30, 2025

• Blender2NeuroML

  Public
  Conversion script to bring neuron models created in Blender into NeuroML format

  Python

  •

  MIT License

  •6•18•2•0•Updated Jul 25, 2025Jul 25, 2025

• Worm2D

  Public
  Simulator of 2D worm body models

  C++

  •

  MIT License

  •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• openwormbrowser-ios

  Public
  OpenWorm Browser for iOS, based on the open-3d-viewer, which was based on Google Body Browser

  Objective-C

  •

  Other

  •15•21•3•1•Updated Jul 2, 2025Jul 2, 2025

• tierpsy-tracker

  Public
  Multi-Worm Behaviour Tracker. README here:

  Python

  •

  MIT License

  •38•2•0•0•Updated Jun 29, 2025Jun 29, 2025

• openworm.github.io

  Public
  OpenWorm main website

  HTML

  •35•29•14•0•Updated Jun 29, 2025Jun 29, 2025

• ConnectomeToolbox

  Public
  Information on published connectomics data related to C. elegans

  Python

  •

  MIT License

  •5•2•3•1•Updated Jun 24, 2025Jun 24, 2025

• .github

  Public
  The OpenWorm organisation template repository.

  Python

  •0•3•1•0•Updated Jun 19, 2025Jun 19, 2025

• NicolettiEtAl2024_MN_IN

  Public
  C.elegans motor and interneurons (Nicoletti at al. 2024)

  Python

  •4•0•4•2•Updated Jun 19, 2025Jun 19, 2025

• hodgkin_huxley_tutorial

  Public
  A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook

  Python

  •

  GNU Lesser General Public License v3.0

  •9•47•5•0•Updated Jun 19, 2025Jun 19, 2025

• openworm.ai

  Public
  Scripts related to use of LLMs and other AI technology in OpenWorm

  HTML

  •

  MIT License

  •0•1•2•0•Updated Jun 12, 2025Jun 12, 2025

• wormneuroatlas

  Public
  Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: https://francescorandi.github.io/wormneuroatlas/

  Python

  •

  GNU General Public License v3.0

  •8•2•0•0•Updated May 28, 2025May 28, 2025

• muscle_model

  Public
  Model of C elegans body wall muscle based on Boyle & Cohen 2008

  Jupyter Notebook

  •

  Other

  •23•48•17•1•Updated May 15, 2025May 15, 2025

• JohnsonMailler_MuscleModel

  Public
  C. elegans muscle model from Johnson & Mailler 2015

  HTML

  •1•2•3•0•Updated May 15, 2025May 15, 2025

• NeuroPAL

  Public
  Scripts to analyse and convert NeuroPAL datasets

  neurosciencecelegansopenworm+ 23dneuroml

  Jupyter Notebook

  •0•5•0•0•Updated Apr 29, 2025Apr 29, 2025

• NicolettiEtAl2019_NeuronModels

  Public
  Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)

  Jupyter Notebook

  •2•1•2•0•Updated Apr 28, 2025Apr 28, 2025

• tracker-commons

  Public
  Compilation of information and code bases related to open-source trackers for C. elegans

  Scala

  •13•12•28•4•Updated Apr 23, 2025Apr 23, 2025

• geppetto-client

  Public
  The web client of a Geppetto application

  JavaScript

  •

  Other

  •2•5•70•27•Updated Apr 18, 2025Apr 18, 2025

• org.geppetto.frontend

  Public
  Geppetto Java frontend bundle

  Java

  •

  Other

  •25•29•2•4•Updated Apr 3, 2025Apr 3, 2025

• org.geppetto.datasources

  Public
  Java

  •

  Other

  •2•2•0•5•Updated Mar 28, 2025Mar 28, 2025

• org.geppetto.core

  Public
  Geppetto core bundle

  Java

  •

  Other

  •11•23•6•7•Updated Mar 28, 2025Mar 28, 2025

• owmeta-core

  Public
  Core library for owmeta

  Python

  •

  MIT License

  •2•3•41•0•Updated Mar 18, 2025Mar 18, 2025

• simulate

  Public
  Links to online simulations of the worm

  HTML

  •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

• wormpose

  Public
  WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •17•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• PlateauNoiseModel

  Public
  Repo contains a Jupyter notebook detailing model and plotting code for "Kenngott et al 2025, An Unusual Potassium Conductance Protects C elegans Pharyngeal Muscle Against Environmental Noise"

  Jupyter Notebook

  •1•0•0•0•Updated Jan 30, 2025Jan 30, 2025