Open Problems in Single-Cell Analysis

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30 packages

preprocessing/process_opsca
Published Nov 20, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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metrics/emd_per_samples
Published Dec 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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metrics/metrics_all
Published Feb 2, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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process_data/op_multiome
Published Feb 26, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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process_data/op_perturbation
Published Feb 26, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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datasets/loaders/scrnaseq/op3
Published Jun 27, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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methods/cycombine_all_controls
Published Jul 13, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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process_data/reologle_k562_gwps
Published Mar 4, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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process_data/norman
Published Mar 4, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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process_data/nakatake
Published Mar 4, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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process_data/adamon
Published Feb 26, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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process_data/opsca
Published Mar 4, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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process_data/reologle
Published Mar 4, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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methods_transcript_assignment/pciseq_transcript_assignment
Published Dec 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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datasets/processors/crop_region
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods_cell_type_annotation/tacco
Published Mar 12, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods_segmentation/stardist
Published Jul 29, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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datasets/loaders/ganier_human_skin_sc
Published Jul 19, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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datasets/loaders/zuani_human_nsclc_sc
Published Jul 15, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods_segmentation/watershed
Published Mar 10, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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datasets/loaders/lu_human_liver_cancer_sc
Published Jul 27, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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datasets/loaders/travaglini_human_lung_sc
Published Jul 21, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods_expression_correction/resolvi_correction
Published Mar 18, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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datasets/loaders/vizgen_merscope
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods_segmentation/binning
Published Dec 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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datasets/loaders/lee_human_colon_cancer_sc
Published Jul 28, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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datasets/loaders/spatial/tenx_visium
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

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datasets/loaders/wu_human_breast_cancer_sc
Published Mar 14, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods_segmentation/cellpose
Published Nov 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods/cytonorm_all_controls
Published Jul 17, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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