Repositories list

• oPool_display

  Public
  Antibody library selection

  R

  •0•0•0•0•Updated Aug 18, 2025Aug 18, 2025

• WSN_NEP_DMS

  Public
  NEP deep mutation scanning

  Python

  •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• COV107-23_fitness_landscape

  Public
  Code to analyze deep sequencing files of COV107-23 combinatorial mutations, and ddG simulations of COV107-23 mutations

  Python

  •0•0•0•0•Updated Sep 23, 2024Sep 23, 2024

• HA_Abs

  Public
  The repository includes all custom scripts and deep learning model code associated with the paper titled "An Explainable Language Model for Antibody Specificity Prediction Using Curated Influenza Hemagglutinin Antibodies.

  Python

  •2•5•1•1•Updated Jul 10, 2024Jul 10, 2024

• S2P6_lib-on-lib_screen

  Public
  HTML

  •0•0•0•0•Updated Jun 6, 2024Jun 6, 2024

• SARS2_FP_DMS

  Public
  Python

  •0•0•0•0•Updated May 13, 2024May 13, 2024

• H3N2_2020_RBS_epistasis

  Public
  R

  •0•0•0•0•Updated May 1, 2024May 1, 2024

• SARS2_HR1_DMS_Abs

  Public
  R

  •0•0•0•0•Updated Sep 29, 2023Sep 29, 2023

• CR9114_LC_CDRH3_screen

  Public
  R

  •0•1•0•0•Updated Sep 27, 2023Sep 27, 2023

• Ab_allele_polymorphism

  Public
  Python

  •0•1•0•0•Updated Sep 9, 2023Sep 9, 2023

• Mos99_NA_DMS

  Public
  Python

  •0•0•0•0•Updated Mar 8, 2023Mar 8, 2023

• SARS2_S_fusogenicity_DMS

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 15, 2023Feb 15, 2023

• IGHV2-5_RBD_Abs

  Public
  Scala

  •0•0•0•0•Updated Oct 14, 2022Oct 14, 2022

• N2_evol_contingency

  Public
  Python

  •0•0•0•0•Updated Oct 11, 2022Oct 11, 2022

• SARS-CoV-2_NTD_DMS

  Public
  R

  •0•0•0•0•Updated Sep 10, 2022Sep 10, 2022

• SARS-CoV-2_Abs

  Public
  Jupyter Notebook

  •1•4•0•0•Updated May 16, 2022May 16, 2022

• SARS-CoV-2_in_vitro_adaptation

  Public
  Python

  •

  Apache License 2.0

  •2•2•0•0•Updated Jun 13, 2021Jun 13, 2021

• UK_strain_in_vitro_fitness

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated May 4, 2021May 4, 2021