Repositories list

• brainchop

  Public
  Brainchop: In-browser 3D MRI rendering and segmentation

  javascriptdeep-learningmri+ 8medical-imagingneuroimagingfrontend-appthree-js3d-segmentationtensorflowjsmri-segmentation+ 1

  JavaScript

  •

  MIT License

  •56•445•3•0•Updated Aug 13, 2025Aug 13, 2025

• meanMLP

  Public
  Code examples for model introspection

  Jupyter Notebook

  •

  MIT License

  •1•6•0•0•Updated Aug 8, 2025Aug 8, 2025

• pathtree

  Public
  Marginalizes latent variables in graphical models without losing essential delay (lag) information.

  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Aug 7, 2025Aug 7, 2025

• undersampling-project

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Aug 7, 2025Aug 7, 2025

• brainchop-cli

  Public
  Portable and lightweight brain segmentation in the terminal!

  JavaScript

  •

  MIT License

  •2•13•4•0•Updated Aug 6, 2025Aug 6, 2025

• DECIFRA

  Public
  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Jul 11, 2025Jul 11, 2025

• trends_scripts

  Public
  Shell

  •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• algorithms

  Public
  Design and analysis of algorithms lecture slides

  HTML

  •

  MIT License

  •0•0•0•0•Updated May 27, 2025May 27, 2025

• catalyst_example

  Public
  an example of the training file supporting distributed training and curriculum learning with Catalyst

  Python

  •

  MIT License

  •1•0•0•0•Updated Apr 20, 2025Apr 20, 2025

• brainchop-models

  Public
  Shared repository for storing segmentation models for brainchop and brainchop-cli

  Python

  •0•0•0•0•Updated Mar 31, 2025Mar 31, 2025

• AML

  Public
  Slides and other materials for the advanced machine learning course

  HTML

  •

  MIT License

  •0•1•0•0•Updated Feb 25, 2025Feb 25, 2025

• wirehead

  Public
  Distributed caching system and wrapper for synthetic data generation

  Python

  •

  MIT License

  •1•3•0•0•Updated Feb 24, 2025Feb 24, 2025

• catalyst

  Public
  Accelerated deep learning R&D

  Python

  •

  Apache License 2.0

  •394•0•0•0•Updated Feb 23, 2025Feb 23, 2025

• llm

  Public
  our llm training and inference stack

  0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• CSRP-CSRParcellation

  Public
  CSRParcellation is an advanced extension of the CortexODE framework, integrating cutting-edge Graph Neural Networks and CSR deep learning methodologies to revolutionize cortical surface reconstruction for enhanced neuroimaging analysis.

  Python

  •0•1•0•0•Updated Nov 15, 2024Nov 15, 2024

• polyssifier

  Public
  run a multitude of classifiers on you data and get an AUC report

  Python

  •

  GNU General Public License v2.0

  •23•0•0•0•Updated Aug 30, 2024Aug 30, 2024

• mindfultensors

  Public
  Dataloader that serves (f)MRI images from key-value databases (mongo and Redis to start with)

  Python

  •

  MIT License

  •1•3•0•1•Updated Aug 13, 2024Aug 13, 2024

• neuroneuralnets

  Public
  Implementations of neural network architectures

  Python

  •0•1•0•0•Updated Jul 30, 2024Jul 30, 2024

• BrainPlots

  Public
  Surface reconstruction review analysis at Trends Center

  Jupyter Notebook

  •1•0•0•0•Updated Jul 15, 2024Jul 15, 2024

• FastSurfer_benchmark

  Public
  Investigating fastsurfer as a benchmark

  Jupyter Notebook

  •

  Apache License 2.0

  •137•0•0•0•Updated Jun 24, 2024Jun 24, 2024

• gunfolds

  Public
  Tools for working with compressed graphs and solving forward and the inverse problems in undersampling and latent variable cases. The package provides implementation of MSL, RASL, ASP-based, CSP-based, and other algorithms

  Python

  •

  GNU General Public License v3.0

  •1•4•1•2•Updated Jun 23, 2024Jun 23, 2024

• neuroneural.github.io

  Public
  HTML

  •0•0•0•1•Updated May 17, 2024May 17, 2024

• python-icar

  Public
  Tools for performing group ICA on fMRI data using ICA-Torch

  Python

  •0•1•0•0•Updated May 13, 2024May 13, 2024

• nshor_docker

  Public
  Containerized fMRI Preprocessing Pipeline

  Shell

  •1•4•0•0•Updated May 13, 2024May 13, 2024

• niivue-brainchop

  Public
  Niivue + brainchop demo implementation

  JavaScript

  •

  Other

  •3•0•0•0•Updated Apr 29, 2024Apr 29, 2024

• Meshnet_Cpp

  Public
  C++

  •0•0•0•0•Updated Apr 22, 2024Apr 22, 2024

• immunetworkstf

  Public
  HCL

  •0•0•0•0•Updated Apr 10, 2024Apr 10, 2024

• immunetworksapp

  Public
  Python

  •0•0•0•0•Updated Apr 5, 2024Apr 5, 2024

• neuroneural

  Public
  HTML

  •1•0•0•0•Updated Mar 19, 2024Mar 19, 2024

• cortexGNN

  Public
  GNN extension to PialNN for OHBM

  Python

  •0•1•0•0•Updated Mar 18, 2024Mar 18, 2024