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    71 repositories

    • slides-big-imaging-data-osw25

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 5, 2025Aug 5, 2025

    • datashuttle

      Public
      Tool for the creation, validation and transfer of neuroscience project folders.
      neurosciencedata-managementneuroblueprint
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•25•52•11•Updated Aug 5, 2025Aug 5, 2025

    • course-animals-in-motion

      Public
      Course materials for "Animals in Motion"
      TeX
      •
      Creative Commons Attribution 4.0 International
      •0•2•6•2•Updated Aug 5, 2025Aug 5, 2025

    • movement

      Public
      A Python toolbox for analysing animal body movements across space and time
      behaviorkinematicsneurosciencebehaviouranimalmotion-trackingethology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •64•192•103•30•Updated Aug 5, 2025Aug 5, 2025

    • slides-osw25-intro

      Public
      Shared introductory slides to use at the start of each day at OSW
      SCSS
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•1•Updated Aug 5, 2025Aug 5, 2025

    • python-cookiecutter

      Public
      Utility to create a basic Python project structure with tests, CI etc.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•32•13•1•Updated Aug 5, 2025Aug 5, 2025

    • ethology

      Public
      Mix-and-match computer vision tools for your animal behaviour analysis
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•18•31•12•Updated Aug 5, 2025Aug 5, 2025

    • swc-slack

      Public
      Tools to interface with slack
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•7•0•0•Updated Aug 5, 2025Aug 5, 2025

    • slurmio

      Public
      Python tools to read SLURM job parameters.
      Python
      •
      MIT License
      •1•8•0•0•Updated Aug 5, 2025Aug 5, 2025

    • qt-niu

      Public
      Reusable Qt elements
      Python
      •
      MIT License
      •0•3•0•0•Updated Aug 5, 2025Aug 5, 2025

    • fancylog

      Public
      Fancier logging with python.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•12•8•2•Updated Aug 5, 2025Aug 5, 2025

    • spikewrap

      Public
      A package to manage electrophysiology analysis.
      electrophysiologyneuropixelsextracellular-electrophysiology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •15•23•21•5•Updated Aug 4, 2025Aug 4, 2025

    • neuroinformatics-unit.github.io

      Public
      Home website of the Neuroinformatics Unit
      BSD 3-Clause "New" or "Revised" License
      •0•10•9•1•Updated Aug 4, 2025Aug 4, 2025

    • actions

      Public
      Re-usable GitHub Action scripts
      MIT License
      •4•10•7•1•Updated Aug 4, 2025Aug 4, 2025

    • NeuroBlueprint

      Public
      Lightweight data specification for systems neuroscience, inspired by BIDS.
      Creative Commons Attribution 4.0 International
      •4•19•12•2•Updated Aug 2, 2025Aug 2, 2025

    • osw25-hackday

      Public
      A place to create and discuss ideas for the 2025 Open Software Week hackathon
      BSD 3-Clause "New" or "Revised" License
      •0•0•7•0•Updated Aug 1, 2025Aug 1, 2025

    • smart-kages-movement

      Public
      Using the movement package to analysing mouse home cage monitoring data acquired in Smart-Kages and tracked with DeepLabCut.
      trackingmousebehaviourmovement
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•1•0•Updated Jul 31, 2025Jul 31, 2025

    • scripts

      Public
      Small but useful scripts to share
      Python
      •0•7•0•1•Updated Jul 31, 2025Jul 31, 2025

    • sphinx-deployment-test

      Public
      A "toy" website repository for testing our sphinx build and deploy GitHub actions
      Creative Commons Attribution 4.0 International
      •1•0•0•1•Updated Jul 28, 2025Jul 28, 2025

    • photon-mosaic

      Public
      Automated and reproducible analysis of multiphoton calcium imaging datasets
      neuroscienceneuroscience-methods
      Python
      •
      GNU General Public License v3.0
      •0•7•13•0•Updated Jul 24, 2025Jul 24, 2025

    • derotation

      Public
      Derotate images acquired via multiphoton calcium imaging
      neurosciencecalcium-imagingneuroscience-methods
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•7•7•0•Updated Jul 24, 2025Jul 24, 2025

    • suite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •258•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • artifact.ci

      Public
      🗿 view github artifacts in your browser
      TypeScript
      •
      Apache License 2.0
      •2•0•0•0•Updated Jul 24, 2025Jul 24, 2025

    • HowTo

      Public
      NIU website on common software problems and their troubleshooting
      Creative Commons Attribution 4.0 International
      •1•10•11•0•Updated Jul 22, 2025Jul 22, 2025

    • software-skills

      Public
      Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit
      Creative Commons Attribution 4.0 International
      •0•7•0•0•Updated Jun 3, 2025Jun 3, 2025

    • students-exercises

      Public
      A series of Python exercises to make the students practice before starting the main project
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•1•0•Updated Jun 2, 2025Jun 2, 2025

    • zebras-stitching

      Public
      Exploring how to stitch drone imagery and animal trajectories
      Python
      •3•1•1•0•Updated May 26, 2025May 26, 2025

    • .github

      Public
      MIT License
      •0•6•0•0•Updated May 22, 2025May 22, 2025

    • slides-photon-mosaic-01

      Public
      Photon-mosaic presentation
      SCSS
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 21, 2025May 21, 2025

    • dashboard

      Public
      Overview of all Neuroinformatics Unit repos
      TypeScript
      •
      MIT License
      •28•1•1•0•Updated Apr 23, 2025Apr 23, 2025