Repositories list

• ADRD_Brain_Aging

  Public
  ADRD Brain Aging projects

  Jupyter Notebook

  •1•3•0•0•Updated Aug 28, 2025Aug 28, 2025

• SAHA

  Public
  Semi-automated hand annotation for single cell and spatial datasets

  R

  •

  MIT License

  •0•0•18•0•Updated Jun 11, 2025Jun 11, 2025

• SAHAdata

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated May 29, 2025May 29, 2025

• methylation-iPSC-PBMC

  Public
  R

  •1•0•0•0•Updated Apr 10, 2025Apr 10, 2025

• LNG_utils

  Public
  Utility Functions & Scripts for Analysis in NIH HPC

  Shell

  •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

• Xenium_Line61_spatial

  Public
  R

  •0•1•0•0•Updated Nov 22, 2024Nov 22, 2024

• amppd_wb_eqtl

  Public
  AMP-PD Whole-Blood eQTL analyses

  Jupyter Notebook

  •0•1•0•0•Updated Oct 2, 2024Oct 2, 2024

• Bidirectional_PD_Smell

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

• LNG_posters

  Public
  0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

• 23andme_rare_variants

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Sep 18, 2023Sep 18, 2023

• Detection-of-Frailty-with-Biomarkers-A-Population-Health-Study

  Public
  Supplemental Documents and Analysis Code

  R

  •0•0•0•0•Updated Jun 7, 2023Jun 7, 2023

• NBIA_PD

  Public
  0•1•0•0•Updated Dec 9, 2022Dec 9, 2022

• GenoML_IPDGC

  Public
  This is a small workshop put together to demonstrate how GenoML works - presented at the IPDGC conference

  Jupyter Notebook

  •2•2•0•6•Updated Dec 8, 2022Dec 8, 2022

• PD_SV_SRS

  Public
  GATK-SV manuscript analysis

  0•0•0•0•Updated Nov 28, 2022Nov 28, 2022

• Gaucher_PD_GRS_modifiers

  Public
  0•0•0•0•Updated Nov 18, 2022Nov 18, 2022

• PD-BURDEN

  Public
  Shell

  •0•0•0•0•Updated Sep 20, 2022Sep 20, 2022

• GWAS-pipeline

  Public
  This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.

  gwasgwas-pipeline

  R

  •24•43•2•0•Updated May 18, 2022May 18, 2022

• chrY_haplogroups_PD

  Public
  project analyzing Y chromosome variants, genes and haplogroups in Parkinson's disease.

  Jupyter Notebook

  •0•1•0•0•Updated May 12, 2022May 12, 2022

• LRRK2-microglia-eQTL

  Public
  Jupyter Notebook

  •1•5•0•0•Updated Mar 16, 2022Mar 16, 2022

• Familial-Myasthenia-Gravis

  Public
  Associated calculations for the paper "New evidence for a genetic contribution to myasthenia gravis"

  R

  •1•0•0•0•Updated Jan 29, 2022Jan 29, 2022

• LRRK2_conditional_v3

  Public
  2•3•0•0•Updated Jul 14, 2021Jul 14, 2021

• GWAS_locus_browser

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •3•2•0•0•Updated May 6, 2021May 6, 2021

• APOE_genotypes

  Public
  Short script to identify APOE genotypes per sample using PLINK and Python

  Python

  •2•3•0•0•Updated May 5, 2021May 5, 2021

• Autosomal-sex-differences-PDv2

  Public
  Investigation whether there are autosomal sex differences in risk for PD

  2•2•0•0•Updated Apr 14, 2021Apr 14, 2021

• GWAS-projections

  Public
  0•0•0•0•Updated Feb 25, 2021Feb 25, 2021

• UKbiobank_SNCA

  Public
  UK Biobank SNCA scripts and pipelines

  R

  •2•6•0•0•Updated Jan 7, 2021Jan 7, 2021

• PD-vs-MS

  Public
  0•0•0•0•Updated Jan 5, 2021Jan 5, 2021

• Multiple_Phenotype_LocusZoom

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 23, 2020Dec 23, 2020

• PD_STR_imputation

  Public
  Imputing STR calls from PD SNP based data using the Gymrek STR 1kg reference panel

  0•2•0•0•Updated Sep 2, 2020Sep 2, 2020

• talks

  Public
  A repository to store recent talks from LNG members.

  Jupyter Notebook

  •1•3•0•0•Updated Aug 20, 2020Aug 20, 2020