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@netneurolab Network Neuroscience Lab

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    42 repositories

    • netneurotools

      Public
      Useful tools from the Network Neuroscience Lab
      pythonneuroimaginghacktoberfestbrain-imagingbrain-networks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •34•75•8•4•Updated Aug 6, 2025Aug 6, 2025

    • netneurolab.github.io

      Public
      Network Neuroscience Lab Website
      SCSS
      •1.3k•0•0•0•Updated Aug 5, 2025Aug 5, 2025

    • ceballos_neuropeptide-organization

      Public
      Repository for the project "Mapping neuropeptide signaling in the human brain"
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•7•0•0•Updated Jul 29, 2025Jul 29, 2025

    • luppi-cognitive-matching

      Public
      MATLAB code for Luppi et al (2025) "General anaesthesia reduces the uniqueness of brain functional connectivity across individuals and across species", Nature Human Behaviour
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Jul 24, 2025Jul 24, 2025

    • hansen_many_networks

      Public
      Data and code supporting Hansen et al., 2023 PLOS Biology "Integrating multimodal and multiscale connectivity blueprints of the human cerebral cortex in health and disease"
      Python
      •5•28•0•0•Updated Jul 22, 2025Jul 22, 2025

    • Farahani_ALS

      Public
      Network spreading and local biological vulnerability in amyotrophic lateral sclerosis
      Python
      •1•2•0•0•Updated Jul 11, 2025Jul 11, 2025

    • milisav_hierarchical_modularity

      Public
      Data and code supporting Milisav et al., 2025 "Neuromorphic hierarchical modular reservoirs"
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Jul 9, 2025Jul 9, 2025

    • Farahani_Blood_Perfusion

      Public
      Cerebral blood perfusion across biological systems and the human lifespan
      Python
      •0•2•0•0•Updated Jun 20, 2025Jun 20, 2025

    • hansen_synaptome

      Public
      Data and code supporting Hansen et al., 2025, bioRxiv "Synaptome architecture shapes regional dynamics in the mouse brain"
      Python
      •0•3•0•0•Updated Jun 10, 2025Jun 10, 2025

    • neuromaps-mouse

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Jun 5, 2025Jun 5, 2025

    • neuromaps

      Public
      A toolbox for comparing brain maps
      pythonneuroimaginghacktoberfestbrain-imaging
      Python
      •
      Other
      •62•296•25•7•Updated Apr 23, 2025Apr 23, 2025

    • pourmajidian_metabolism-genes

      Public
      Python
      •1•2•0•0•Updated Mar 31, 2025Mar 31, 2025

    • pypmi

      Public
      A very small toolbox for working with data from the Parkinson's Progression Markers Initiative (PPMI)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•0•0•0•Updated Mar 8, 2025Mar 8, 2025

    • luppi-neurosynth-control

      Public
      Code for Luppi et al (2024) Nature Biomedical Engineering
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •3•3•1•0•Updated Feb 2, 2025Feb 2, 2025

    • luppi-genes-receptors-macaque

      Public
      MATLAB code for Luppi et al (2024) "Benchmarking macaque brain gene expression for horizontal and vertical translation"
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • liu_fc-pyspi

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•8•0•0•Updated Jan 16, 2025Jan 16, 2025

    • bazinet_spins

      Public
      Code supporting Bazinet et al., 2024, "The effect of spherical projection on spin tests for brain maps" (bioRxiv)
      Python
      •1•0•0•0•Updated Jan 13, 2025Jan 13, 2025

    • markello_transcriptome

      Public
      Code and documentation supporting Markello et al, 2021, "Standardizing workflows in imaging transcriptomics with the abagen toolbox" (Biorxiv)
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •3•8•1•0•Updated Jan 12, 2025Jan 12, 2025

    • markello_ppmisnf

      Public
      Code supporting the recent preprint Markello et al., 2020
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•34•2•3•Updated Jan 12, 2025Jan 12, 2025

    • liu_meg-scfc

      Public
      Python
      •1•1•0•0•Updated Jan 12, 2025Jan 12, 2025

    • shafiei_megdynamics

      Public
      Code supporting Shafiei et al., 2023 "Neurophysiological signatures of cortical micro-architecture".
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•8•0•0•Updated Jan 12, 2025Jan 12, 2025

    • shafiei_megfmrimapping

      Public
      Code supporting Shafiei et al., 2022 "Human electromagnetic and haemodynamic networks systematically converge in unimodal cortex and diverge in transmodal cortex".
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•6•0•0•Updated Jan 12, 2025Jan 12, 2025

    • abagen

      Public
      A toolbox for working with Allen Human Brain Atlas microarray expression data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •45•12•0•0•Updated Jan 12, 2025Jan 12, 2025

    • suarez_neuromorphicnetworks

      Public
      Code supporting Suarez et al., 2021 "Learning function from structure in neuromorphic networks". ()
      Python
      •
      GNU General Public License v3.0
      •13•53•1•0•Updated Jan 12, 2025Jan 12, 2025

    • bazinet_multiscale

      Public
      Code and documentation supporting Bazinet et al., 2020, "Multiscale communication in cortico-cortical networks"
      Python
      •2•1•0•0•Updated Jan 12, 2025Jan 12, 2025

    • marmoset_connectome

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Jan 12, 2025Jan 12, 2025

    • milisav_strength_nulls

      Public
      Data and code supporting Milisav et al., 2024 "A simulated annealing algorithm for randomizing weighted networks"
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•6•0•0•Updated Jan 6, 2025Jan 6, 2025

    • conn2res

      Public
      A reservoir computing toolbox for neuroscientists
      pythonreservoircomputingneuroai
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •26•106•2•2•Updated Dec 20, 2024Dec 20, 2024

    • pypyls

      Public
      A Python implementation of Partial Least Squares (PLS) decomposition
      Python
      •
      GNU General Public License v2.0
      •35•70•13•1•Updated Dec 17, 2024Dec 17, 2024

    • hansen_brainstemfc

      Public
      Data and code supporting Hansen et al., 2024, Nature Neuroscience "Integrating brainstem and cortical functional architectures"
      Python
      •2•9•0•0•Updated Oct 24, 2024Oct 24, 2024