Repositories list

• bacterial_growth

  Public
  a database and an interface for bacterial growth data

  pythonsqlgrowth-curves+ 1bacterial-database

  Python

  •3•1•15•0•Updated Jun 17, 2025Jun 17, 2025

• microbetag

  Public
  annotating microbial co-occurrence networks

  Python

  •

  GNU General Public License v3.0

  •4•7•10•0•Updated Jun 8, 2025Jun 8, 2025

• MGG

  Public
  Gui for Microbetag based on scNetViz

  Java

  •

  Apache License 2.0

  •6•4•5•0•Updated Jun 8, 2025Jun 8, 2025

• PlasticEnz

  Public
  Python

  •0•0•0•0•Updated May 13, 2025May 13, 2025

• CellScanner

  Public
  CellScanner counts microbial species in flow cytometry data of communities separately with the help of a classifier that is trained on mono-cultures.

  Python

  •

  GNU General Public License v3.0

  •1•1•5•0•Updated Apr 1, 2025Apr 1, 2025

• PlasticDaphnia-ISMEJ

  Public
  Effects of microplastics on Daphnia-associated microbiomes in situ and in vitro

  HTML

  •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

• microbetagApp-public

  Public
  microbetag web service

  Python

  •0•1•6•0•Updated Aug 13, 2024Aug 13, 2024

• BTRI_mucin_study_data

  Public
  Processed RNA-seq and fermentation data for "Starvation response strategies of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis and their impact on co-culture dynamics".

  0•1•0•0•Updated Feb 13, 2024Feb 13, 2024

• BTRI_mucin_study_scripts

  Public
  Scripts for "Starvation response strategies of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis and their impact on co-culture dynamics".

  MATLAB

  •0•0•0•0•Updated Feb 17, 2023Feb 17, 2023

• .github

  Public
  msysbio-welcome

  0•2•0•0•Updated Dec 20, 2022Dec 20, 2022

• GutMicrobes2022

  Public
  Supplementary Material for van de Velde et al. Gut Microbes 2022

  R

  •0•0•0•0•Updated Dec 20, 2022Dec 20, 2022