Biochemical Data Science Lab

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22 repositories

2025-AOP-CNNKAN
Public
Python
•0•0•0•0•Updated Jun 5, 2025Jun 5, 2025
2025-MGTP
Public
Python
•0•0•0•0•Updated Jan 15, 2025Jan 15, 2025
2025-sgRNA-TAC
Public
0•0•0•0•Updated Dec 6, 2024Dec 6, 2024
2024-SMTP
Public
Python
•0•0•0•0•Updated Oct 19, 2024Oct 19, 2024
2024-iACP-GCR
Public
Source code and data of the paper entitled "iACP-GCR: Identifying multi-target anticancer compounds using multitask learning on graph convolutional residual neural networks"
machine-learning deep-learning resnet graph-convolutional-networks multitask-learning graph-deep-learning anticancer
Python
•1•1•1•2•Updated Jul 22, 2024Jul 22, 2024
2024-Nephrotoxicity-ML
Public
0•0•0•0•Updated Jun 25, 2024Jun 25, 2024
2023-iCardioTox-AGN
Public
0•1•0•0•Updated Nov 6, 2023Nov 6, 2023
2023-i6mA-CNN
Public
Source code and data of the paper entitled "i6mA-CNN: Identifying DNA N6-Methyladenine Sites in Mice using Convolutional Neural Networks with Multiple Kernel Sizes"
machine-learning deep-learning bionformatics sequence-analysis
0•0•0•0•Updated Oct 17, 2023Oct 17, 2023
2022-iR1mA-LSTM
Public
Source code and data of the paper entitled "iR1mA-LSTM: Identifying N1-Methyladenosine Sites in Human Transcriptomes using Attention-based Bi-LSTM"
machine-learning bioinformatics deep-learning sequence-analysis
0•0•0•0•Updated Jun 27, 2023Jun 27, 2023
2021-iANP-EC
Public
Source code and data of the paper entitled "iANP-EC: Identifying Anticancer Natural Products Using Ensemble Learning Incorporated with Evolutionary Computation"
deep-learning drug-discovery chemoinformatics evolutionary-computation machine-learning
Python
•0•3•0•0•Updated Jun 27, 2023Jun 27, 2023
2021-iCYP-MFE
Public
Source code and data of the paper entitled "iCYP-MFE: Identifying Human Cytochrome P450 Inhibitors using Multi-task Learning and Molecular Fingerprint-embedded Encoding"
machine-learning deep-learning drug-discovery chemoinformatics multitask-learning
Python
•3•18•1•0•Updated Jun 27, 2023Jun 27, 2023
2022-iPromoter-Seqvec
Public
Source code and data of the paper entitled "iPromoter-Seqvec: Identifying Promoters using Bidirectional Long Short-Term Memory and Sequence-embedded Features"
machine-learning bioinformatics deep-learning sequence-analysis
Python
•1•5•1•0•Updated Jun 27, 2023Jun 27, 2023
2021-NPBERT-Antimalaria
Public
Source code and data of the paper entitled "Predicting Antimalarial Activity in Natural Products Using Pretrained Bidirectional Encoder Representations from Transformers"
deep-learning drug-discovery chemoinformatics machine-learning
Python
•2•4•2•0•Updated Jun 27, 2023Jun 27, 2023
2022-i4mC-GRU
Public
Source code and data of the paper entitled "i4mC-GRU: Identifying DNA N4-Methylcytosine Sites in Mice using Bidirectional GRU and Sequence-embedded Features"
machine-learning bioinformatics deep-learning sequence-analysis
Python
•0•0•0•0•Updated Jun 27, 2023Jun 27, 2023
2020-DILI-CNN-MFE
Public
Source code and data of the paper entitled "Predicting Drug-Induced Liver Injury Using Convolutional Neural Network and Molecular Fingerprint-Embedded Features"
machine-learning deep-learning drug-discovery chemoinformatics
Python
•4•10•2•0•Updated Jun 27, 2023Jun 27, 2023
2023-iR6mA-RNN
Public
0•0•0•0•Updated May 25, 2023May 25, 2023
2023-iBBBP-EDL
Public
0•0•0•0•Updated Feb 9, 2023Feb 9, 2023
2022-iAMP-DL
Public
Jupyter Notebook
•1•0•0•0•Updated Jan 7, 2023Jan 7, 2023
chemtonic_released
Public
Python library for chemical data curation
Jupyter Notebook
•
MIT License
•0•0•0•1•Updated Jan 26, 2022Jan 26, 2022
2019-PlantDB_review
Public
Source code and data of the paper entitled "Plant Metabolite Databases: From Herbal Medicines to Modern Drug Discovery"
database plant-metabolite herbal-medicines modernizing-traditional-medicines
0•2•0•0•Updated Sep 18, 2021Sep 18, 2021
2021-cMIC-AntiKP
Public
machine-learning bioinformatics deep-learning bacterial-genome-analysis
0•0•0•0•Updated Jun 1, 2021Jun 1, 2021
2021-iNSP-CTDC
Public
0•0•0•0•Updated Jun 1, 2021Jun 1, 2021