Repositories list

• mastodon-deep-lineage

  Public
  A collection of plugins to analyse lineages of tracked objects in Mastodon

  Java

  •

  BSD 2-Clause "Simplified" License

  •1•5•9•3•Updated Aug 22, 2025Aug 22, 2025

• mastodon-ctc

  Public
  Mastodon plugins to import from and export to (not only) the CellTrackingChallenge format

  Java

  •

  BSD 2-Clause "Simplified" License

  •3•1•7•0•Updated Aug 21, 2025Aug 21, 2025

• mastodon

  Public
  Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.

  imglib2interactive-analysisinteractive-visualizations+ 7tracking-algorithmbioimage-analysismicroscopy-imageslarge-imagescell-lineagejavatrackmate

  Java

  •

  BSD 2-Clause "Simplified" License

  •20•79•22•4•Updated Aug 18, 2025Aug 18, 2025

• mastodon-benchmark

  Public
  Language and framework for reproducible benchmarking of Mastodon main displays.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Aug 14, 2025Aug 14, 2025

• mastodon-documentation

  Public
  The documentation of the Mastodon bioimage analysis tool.

  Python

  •1•1•0•0•Updated Aug 8, 2025Aug 8, 2025

• mastodon-simulator

  Public
  Cell population growth simulator implemented in Mastodon.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•1•3•0•Updated Aug 4, 2025Aug 4, 2025

• bigdataviewer-core

  Public
  For Mastodon-Benchmark only: ImgLib2-based viewer for registered SPIM stacks and more

  Java

  •

  BSD 2-Clause "Simplified" License

  •39•0•0•0•Updated Aug 4, 2025Aug 4, 2025

• mastodon-collection

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •4•3•2•0•Updated Jul 31, 2025Jul 31, 2025

• mastodon-geff

  Public
  Geff I/O for Mastodon

  0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• mastodon-tomancak

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •5•1•9•4•Updated Jul 11, 2025Jul 11, 2025

• mastodon-averoflab

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Apr 6, 2025Apr 6, 2025

• mastodon-blender-view

  Public
  Mastodon 3D View that uses Blender

  Java

  •

  BSD 2-Clause "Simplified" License

  •1•4•11•1•Updated Mar 3, 2025Mar 3, 2025

• mastodon-plugin-example

  Public
  Template / example to get you started writing your own Mastodon plugin or extension.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•1•0•0•Updated Jan 26, 2025Jan 26, 2025

• mastodon-app

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •2•0•0•0•Updated Jan 26, 2025Jan 26, 2025

• mastodon-tracking

  Public
  Basic tracking algorithms based on Mastodon data structures.

  Java

  •

  BSD 2-Clause "Simplified" License

  •3•4•4•1•Updated Jan 26, 2025Jan 26, 2025

• .github

  Public
  Public organization profile for the Mastodon-SC organization.

  2•0•0•0•Updated Jan 17, 2025Jan 17, 2025

• mastodon-pasteur

  Public
  Mastodon plugins developed in the context of Pasteur users projects.

  Java

  •

  BSD 2-Clause "Simplified" License

  •2•2•0•0•Updated Jan 17, 2025Jan 17, 2025

• mastodon-selection-creator

  Public
  A selection creator UI for Mastodon, as a Mastodon plugin.

  Java

  •

  BSD 2-Clause "Simplified" License

  •2•0•2•0•Updated Jan 17, 2025Jan 17, 2025

• mastodon-ellipsoid-fitting

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •3•2•3•0•Updated Jan 17, 2025Jan 17, 2025

• mastodon-graph

  Public
  Java

  •

  BSD 2-Clause "Simplified" License

  •2•3•0•0•Updated Jan 16, 2025Jan 16, 2025

• mastodon-sciview

  Public archive
  A bridge between Mastodon and sciview

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•7•0•Updated Oct 11, 2024Oct 11, 2024

• mastodon-collaborative

  Public archive
  Mastodon plugins to foster collaborative annotations

  Java

  •

  BSD 2-Clause "Simplified" License

  •1•0•10•0•Updated Oct 11, 2024Oct 11, 2024

• mastodon-git

  Public
  A plugin for Mastodon that allows to collaborate on a project via Git.

  Java

  •

  BSD 2-Clause "Simplified" License

  •0•0•15•1•Updated Oct 10, 2024Oct 10, 2024

• mastodon-example-data

  Public
  2•1•0•0•Updated Oct 2, 2024Oct 2, 2024

• mastodon-grapher-opengl

  Public
  Java

  •1•1•2•1•Updated Sep 24, 2024Sep 24, 2024

• mastodon-ext-viewers

  Public
  Tracking data transfers from Mastodon to various viewers (e.g., sciview or Blender)

  Java

  •

  BSD 2-Clause "Simplified" License

  •1•0•0•2•Updated Jul 18, 2024Jul 18, 2024

• python-mastodon-importer

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•4•1•0•Updated Mar 20, 2024Mar 20, 2024

• mastodon-deploy-scripts

  Public
  Utility scripts to build, release and deploy Mastodon as an application.

  Python

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Nov 10, 2022Nov 10, 2022

• matlab-mastodon-importer

  Public
  A MATLAB importer for Mastodon files.

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•0•0•Updated Aug 19, 2022Aug 19, 2022

• mastodon-epicure

  Public
  Toying with extending mastodon core for another application.

  Java

  •0•0•0•0•Updated Jul 25, 2021Jul 25, 2021