kirkegaardlab

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9 repositories

splender
Public
Fit splines to images and videos through differentiable rendering
Python
•1•4•0•0•Updated Jun 13, 2025Jun 13, 2025
recloc
Public
[PRL 2025] Official code for Local Clustering and Global Spreading of Receptors for Optimal Spatial Gradient Sensing
information-theory decision-making automatic-differentiation biophysics jax gradient-sensing cellular-signaling
Python
•0•2•0•0•Updated Apr 17, 2025Apr 17, 2025
diffusionsplit
Public
Python
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MIT License
•0•1•0•0•Updated Dec 6, 2024Dec 6, 2024
cellpose-overlap
Public
Python
•0•0•0•0•Updated Dec 6, 2024Dec 6, 2024
gradnodes
Public
Official code implementation of the paper on adaptive node position in biological transport networks
biological-simulations jax transport-networks differentiable-physics
Python
•
MIT License
•1•5•0•0•Updated Nov 1, 2024Nov 1, 2024
full-scale-leaves
Public
Python
•
MIT License
•0•0•0•0•Updated Oct 29, 2024Oct 29, 2024
deeptangle
Public
[Comms Bio 2023] Official Code for Fast Detection of Slender Bodies in High Density Microoscopy Data
computer-vision deep-learning splines c-elegans latent-space quantitative-biology single-stage-detector
Python
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MIT License
•2•39•0•0•Updated Aug 30, 2024Aug 30, 2024
chemoxrl
Public
[PNAS Nexus 2024] Learning Optimal Integration of Spatial and Temporal Information.
reinforcement-learning recurrent-neural-networks chemotaxis jax
Python
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MIT License
•0•5•0•0•Updated Oct 18, 2023Oct 18, 2023
deeptanglelabel
Public
HTML
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MIT License
•0•2•0•0•Updated Feb 6, 2023Feb 6, 2023