Kids First Data Resource Center

All

107 repositories

kf-dev-single-cell-rna
Public
Common Workflow Language
•
Apache License 2.0
•1•2•0•1•Updated Aug 22, 2025Aug 22, 2025
kf-rnaseq-workflow
Public
🔬 RNA-Seq workflow for Kids-First DRC
bioinformatics cwl drc-harmonization
Common Workflow Language
•
Apache License 2.0
•9•11•1•3•Updated Aug 21, 2025Aug 21, 2025
kf-api-arranger
Public
🏭 a data-model aware GraphQL API that sits above an Elasticsearch cluster
nodejs api graphql docker
TypeScript
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Apache License 2.0
•0•0•0•11•Updated Aug 20, 2025Aug 20, 2025
kf-portal-ui
Public
📊 The Kids First Data Resource Portal and Social Network User Interface
javascript ui portal react
TypeScript
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Apache License 2.0
•14•25•72•5•Updated Aug 19, 2025Aug 19, 2025
kf-api-fhir-service
Public
🔥 FHIR Data Service for Kids First
java docker jest pytest fhir-api smile-cdr
Python
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Apache License 2.0
•3•9•6•3•Updated Aug 18, 2025Aug 18, 2025
kf-key-management
Public
🏭 Application for storing user api tokens from third party services.
java aws aws-lambda
Java
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Apache License 2.0
•4•3•0•9•Updated Aug 15, 2025Aug 15, 2025
kf-alignment-workflow
Public
🔬 Alignment workflow for Kids-First DRC
bioinformatics cwl drc-harmonization
Common Workflow Language
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Apache License 2.0
•6•11•1•0•Updated Aug 7, 2025Aug 7, 2025
kf-api-study-creator
Public
📂 Powers investigator-driven data staging. Backend for Data Tracker app
python graphql django graphene
Python
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Apache License 2.0
•0•1•56•51•Updated Aug 5, 2025Aug 5, 2025
kf-cbioportal-etl
Public
Repository of scripts used to convert dataservice metadata and DRC processed data into cbio portal loading format.
Python
•
Apache License 2.0
•0•2•7•0•Updated Jul 28, 2025Jul 28, 2025
rollcall
Public
A service for managing indices and aliases in an elasticsearch cluster
Java
•
GNU Affero General Public License v3.0
•1•0•0•50•Updated Jul 15, 2025Jul 15, 2025
Kids-First-RNAseq-Nextflow
Public
Nextflow implementation of the Kids First RNAseq production workflow
Nextflow
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Apache License 2.0
•0•1•0•0•Updated Jul 10, 2025Jul 10, 2025
kf-cbioportal-etl-refs
Public
Reference repo for https://github.com/kids-first/kf-cbioportal-etl to seprate code from reference files and configs
Apache License 2.0
•0•0•0•0•Updated Jul 8, 2025Jul 8, 2025
dbgap-reporting
Public
A script for downloading lists of users which have approved dbGaP access requests
Python
•
Apache License 2.0
•0•0•0•0•Updated Jul 7, 2025Jul 7, 2025
kf-longreads-workflow
Public
This is a dev-to-production repo for the Kids First Long reads pipeline
Common Workflow Language
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Apache License 2.0
•1•2•0•0•Updated Jul 1, 2025Jul 1, 2025
kf-annotation-tools
Public
This repo contains commonly share annotation tools. Meant to be generally used as a git submodule for other variant calling workflows to centralize and simplify code development and maintainance.
Common Workflow Language
•
Apache License 2.0
•0•0•0•0•Updated Jun 27, 2025Jun 27, 2025
ngs_checkmate_wf
Public
A cwl workflow to run ngs_checkmate on large datasets
Common Workflow Language
•
Apache License 2.0
•3•0•0•0•Updated Jun 27, 2025Jun 27, 2025
c2m2-submission-process
Public
Jupyter Notebook
•
Apache License 2.0
•1•1•0•3•Updated Jun 25, 2025Jun 25, 2025
kf-api-dataservice
Public
🗄️ Primary API for interacting with the Kids First data
python api flask rest
Python
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Apache License 2.0
•3•5•28•3•Updated Jun 10, 2025Jun 10, 2025
kf-tumor-workflow
Public
Common Workflow Language
•
Apache License 2.0
•0•2•1•2•Updated Jun 6, 2025Jun 6, 2025
kf-somatic-workflow
Public
🔬 Somatic workflow for Kids-First
bioinformatics cwl drc-harmonization
Common Workflow Language
•3•14•0•4•Updated Jun 6, 2025Jun 6, 2025
Kids-First-Sentieon-Joint-Cohort-Genotyping-Workflow
Public
Kids First and Sentieon collaboration to bring a relatively easy and affordable joint calling workflow to CAVATICA
Common Workflow Language
•
Apache License 2.0
•1•0•0•0•Updated May 19, 2025May 19, 2025
kf-api-portal-reports
Public
📝 Generate reports based on queries built using the Kids First Portal
TypeScript
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Apache License 2.0
•1•0•0•3•Updated May 19, 2025May 19, 2025
kf-lib-data-ingest
Public
🏭 Kids First Data Ingest Library
python docker etl data-wrangling ingest graph
Python
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Apache License 2.0
•0•5•24•4•Updated Apr 25, 2025Apr 25, 2025
kf-germline-workflow
Public
Repository for Germline CNV, SNV, and SV Tools and Workflows
Common Workflow Language
•1•1•0•0•Updated Feb 24, 2025Feb 24, 2025
kf-jointgenotyping-workflow
Public
🔬 Joint genotyping workflow for Kids-First DRC
bioinformatics cwl drc-harmonization
Common Workflow Language
•
Apache License 2.0
•1•6•0•0•Updated Nov 21, 2024Nov 21, 2024
kf-dataservice-tools
Public
🧮 tools for interacting with the dataservice
Python
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Apache License 2.0
•0•0•0•0•Updated Aug 22, 2024Aug 22, 2024
PacBio-HiFi-human-WGS-CWL
Public
Common Workflow Language
•
Apache License 2.0
•0•0•0•0•Updated Aug 22, 2024Aug 22, 2024
kf-persona
Public archive
kids-first persona implementation
TypeScript
•
Apache License 2.0
•0•0•4•0•Updated Jul 31, 2024Jul 31, 2024
riff
Public archive
🚧 A Microservice for URL Shortening and sharing.
Java
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GNU Affero General Public License v3.0
•2•0•0•26•Updated Jul 27, 2024Jul 27, 2024
kf-utils-python
Public
🛠 Collection of reusable Python utilities related to the Kids First project
python utility-library chi kids-first
Python
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Apache License 2.0
•0•5•1•1•Updated Jun 17, 2024Jun 17, 2024