Repositories list

• MetFamily

  Public
  Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabolites by mass spectrometry in modern metabolomics is a prerequisite for elucidating this area. However, the identification of metabolites is a major bottleneck in traditional approaches hampering advances. Here…

  annotationanalysismass-spectrometry+ 2metabolitescomprehensive-metabolomics-studies

  R

  •

  GNU General Public License v2.0

  •8•12•15•1•Updated Aug 22, 2025Aug 22, 2025

• MetFragRelaunched

  Public
  Relaunch of the initial MetFrag project.

  Java

  •16•18•47•7•Updated Aug 15, 2025Aug 15, 2025

• fasta-search-service

  Public
  Reusable Docker container for sequence library search and alignment in relational databases with the FASTA program package

  dockerrestfasta+ 1biological-sequences

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Aug 13, 2025Aug 13, 2025

• CRIMSy

  Public
  Cloud Resource and Information Management System

  Java

  •

  Apache License 2.0

  •3•2•48•0•Updated Aug 13, 2025Aug 13, 2025

• IPBSticker

  Public
  Hex Sticker for IPB, tools and Databases

  R

  •1•0•0•0•Updated Jul 29, 2025Jul 29, 2025

• one-health

  Public
  An interactive knowledge base for bioactive compound discovery

  TypeScript

  •0•3•0•0•Updated Jul 18, 2025Jul 18, 2025

• Exploitable

  Public
  A demo project for highlighting some security issues

  Java

  •

  MIT License

  •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

• MolPaintJS

  Public
  Pure HTML5 / JavaScript molecular editor / viewer

  JavaScript

  •

  Apache License 2.0

  •3•8•0•0•Updated Jun 11, 2025Jun 11, 2025

• GoldenMutagenesisWeb

  Public
  This repository is used for the development of the GoldenMutagenesis web application

  R

  •

  GNU Affero General Public License v3.0

  •1•0•9•0•Updated May 21, 2025May 21, 2025

• MetFrag

  Public
  Repo hosting the MetFrag website

  HTML

  •7•10•13•0•Updated Jan 24, 2025Jan 24, 2025

• ipb-charts-public

  Public
  Packaging of applications for Kubernetes as Helm charts or Rancher Apps

  kuberneteshelm

  Smarty

  •

  Apache License 2.0

  •1•0•1•0•Updated Sep 5, 2024Sep 5, 2024

• one-health-sources

  Public
  Code repository for data collection, processing and integration for the One Health Platform project

  0•0•0•0•Updated Jun 5, 2024Jun 5, 2024

• FlavorMiner

  Public
  Jupyter Notebook

  •2•7•0•0•Updated Jun 3, 2024Jun 3, 2024

• MolecularFaces

  Public
  Java Server Faces UI components for chemistry and biochemistry

  chemistrygeneticsbiology+ 4biochemistryjsfjavaserverfaceschemical-structure

  Java

  •

  Apache License 2.0

  •2•2•0•0•Updated May 16, 2024May 16, 2024

• ISATab-DataSets

  Public
  ISA-Tab descriptions of DataSets created and managed at the IPB

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •1•0•0•0•Updated Apr 22, 2024Apr 22, 2024

• libstemmer

  Public
  mavenize snowball stemmer

  Java

  •0•0•0•0•Updated Apr 12, 2024Apr 12, 2024

• iESTIMATE

  Public
  Identifying ESsenTIal Molecular vAriables in Terrestrial Ecology

  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 21, 2024Mar 21, 2024

• MetFamily-testthat

  Public
  to generate testthat file

  R

  •

  GNU General Public License v3.0

  •8•0•0•0•Updated Nov 29, 2023Nov 29, 2023

• MetFragTraining

  Public
  Training material for MetFrag usage

  JavaScript

  •4•3•0•0•Updated Sep 27, 2023Sep 27, 2023

• biobyte

  Public
  Training example for Biobyte

  R

  •

  BSD 2-Clause "Simplified" License

  •0•0•2•0•Updated Jul 31, 2023Jul 31, 2023

• analysis_R-GECO1_CDPK-FRET

  Public
  Synchronisation analysis of R-GECO1 and CDPK-FRET in guard cells

  R

  •0•0•0•0•Updated Jun 26, 2023Jun 26, 2023

• CRIMSy-CI

  Public
  Combined Chemistry DataBase Cartridges

  Dockerfile

  •

  Apache License 2.0

  •0•0•0•0•Updated May 17, 2022May 17, 2022

• fasta-playground

  Public archive
  Test project for sequence library searching

  jsffastajavaserverfaes

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Nov 24, 2021Nov 24, 2021

• Show-And-Tell_Browser-Test-Automation

  Public
  Java

  •1•0•0•0•Updated Nov 5, 2021Nov 5, 2021

• SeqProc

  Public
  A simple example wrapper for a command line tool with graphical interface.

  Java

  •

  MIT License

  •0•0•0•1•Updated Apr 26, 2021Apr 26, 2021

• GoldenMutagenesis

  Public
  Support for rapid design of primers for amino acid exchanges and saturation mutagenesis by Golden Gate cloning.

  primerprimer-designgoldengate

  R

  •

  GNU Lesser General Public License v3.0

  •3•5•0•0•Updated Apr 8, 2021Apr 8, 2021

• specktackle

  Public
  Fork of https://bitbucket.org/sbeisken/specktackle.git

  JavaScript

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Mar 26, 2021Mar 26, 2021

• RMassBank_mFam

  Public
  R

  •2•1•8•2•Updated Nov 22, 2020Nov 22, 2020

• k8sTicket

  Public
  An in-kubernetes load-balancing controller using a ticket-system

  Go

  •

  GNU General Public License v3.0

  •0•0•4•0•Updated Aug 19, 2020Aug 19, 2020

• mFam-Classifier

  Public
  R

  •2•0•0•0•Updated Aug 3, 2020Aug 3, 2020