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@insilico McKinney Machine Learning and Theoretical Physics Lab

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    32 repositories

    • OceanWorldsLocalNPDR

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • QCIRMS

      Public
      QAQC for Isotope Ratio Mass Spectrometry
      R
      •
      GNU General Public License v3.0
      •0•0•4•0•Updated Aug 7, 2025Aug 7, 2025

    • UKF

      Public
      R
      •1•0•0•1•Updated Jul 3, 2025Jul 3, 2025

    • SEITRNet

      Public
      This project implements a SEITR (Susceptible, Exposed, Infected, Treated, Recovered) model for network analysis using R. The model simulates the spread of a disease through a network of individuals, allowing for various network types and parameters.
      R
      •1•0•0•0•Updated Jun 15, 2025Jun 15, 2025

    • centralityNPDR

      Public
      R
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • OceanWorldsBiosig

      Public
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Dec 10, 2024Dec 10, 2024

    • GeneAgeMDD

      Public
      R
      •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

    • OnAIR

      Public
      The On-board Artificial Intelligence Research (OnAIR) Platform is a framework that enables AI algorithms written in Python to interact with NASA's cFS. It is intended to explore research concepts in autonomous operations in a simulated environment.
      Python
      •22•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • plink

      Public
      PLINK fork, builds as a library and adds a handful of features
      C++
      •
      GNU General Public License v2.0
      •1•2•0•1•Updated Jul 22, 2023Jul 22, 2023

    • npdro

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 13, 2023Jun 13, 2023

    • npdr

      Public
      NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model
      gwasrna-seqgene-expressionfeature-selectionglmnearest-neighborsepistasiseqtlgenome-wide-datarelief
      R
      •
      Other
      •6•12•2•0•Updated Jun 10, 2023Jun 10, 2023

    • cncv

      Public
      Consensus Nested Cross-Validation
      R
      •3•8•0•0•Updated Mar 9, 2022Mar 9, 2022

    • Rinbix

      Public
      R interface to the inbix library
      R
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated May 31, 2020May 31, 2020

    • privateEC

      Public
      An R package for Private Evaporative Cooling feature selection and classification with Relief-F and Random Forests
      randomforestclassification-algorithimsrelief-fevaporativecooling
      R
      •4•8•1•0•Updated May 20, 2020May 20, 2020

    • DepressionGeneModules

      Public
      Workflow for creating gene module predictors from RNA-Seq of MDD
      R
      •2•6•1•0•Updated May 5, 2020May 5, 2020

    • predictHAI

      Public
      Predict day28 flu HAI with reGAIN feature selection from baseline gene expression
      R
      •2•4•0•0•Updated Feb 25, 2019Feb 25, 2019

    • stir

      Public
      STatistical Inference Relief
      R
      •6•11•0•0•Updated Jan 27, 2019Jan 27, 2019

    • PriorKnowledgeEpistasisRank

      Public
      Epistasis network centralities that incorporate prior knowledge
      R
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Jan 21, 2019Jan 21, 2019

    • inbix

      Public
      In Silico Bioinformatics Toolbox
      c-plus-plussnpsrandom-forestmachine-learning-algorithmsgene-expressionplinknetwork-analysisrna-seq-analysisclassification-algorithimsclustering-methods
      C++
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Nov 30, 2018Nov 30, 2018

    • reliefseq

      Public
      ReliefSeq is a project for ranking features of genetic sequence data using Relief-F.
      C++
      •
      GNU General Public License v2.0
      •1•1•1•0•Updated Jul 9, 2018Jul 9, 2018

    • inbix_website

      Public
      In silico Bioinformatics Toolbox Website
      PHP
      •1•1•0•0•Updated Jul 1, 2018Jul 1, 2018

    • evaporative-cooling

      Public
      Evaporative Cooling Feature Selection for Genetic Association Studies
      1•1•2•0•Updated Mar 16, 2015Mar 16, 2015

    • jgain

      Public
      Genetic Association Interaction Network (GAIN) tool
      Java
      •0•0•0•0•Updated Mar 16, 2015Mar 16, 2015

    • insilico_labkey

      Public
      Insilico Bioinformatics LabKey work.
      JavaScript
      •0•0•0•0•Updated Feb 6, 2014Feb 6, 2014

    • EC

      Public
      Evaporative Cooling with ReliefF and Random Jungle
      C++
      •
      GNU General Public License v2.0
      •1•6•1•0•Updated Apr 19, 2013Apr 19, 2013

    • randomjungle

      Public
      Random Jungle fork, based on released version 1.2.362
      Shell
      •
      GNU General Public License v2.0
      •0•3•1•0•Updated Apr 10, 2013Apr 10, 2013

    • encore

      Public
      GWAS and biological data analysis tool
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•1•0•Updated Sep 11, 2012Sep 11, 2012

    • pygain

      Public
      Python implementation of GAIN
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Mar 6, 2011Mar 6, 2011

    • converters

      Public
      Tools used to convert between various bioinformatics file formats
      Python
      •1•2•0•0•Updated Feb 24, 2011Feb 24, 2011

    • pysnprank

      Public
      Python implementation of SNPrank
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Sep 25, 2010Sep 25, 2010