Repositories list

• website

  Public
  Website

  HTML

  •3•0•0•0•Updated Jul 29, 2025Jul 29, 2025

• retraction_indexing_missing_pubmed_items

  Public
  This repo shows the analysis completed to attempt to identify 199 PubMed items excluded from "Analyzing the consistency of retraction indexing"

  Python

  •0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

• WhoFundedIt-app

  Public
  Python

  •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

• ComputableBibliography-app

  Public
  Python

  •0•0•0•0•Updated May 24, 2025May 24, 2025

• NER-Model

  Public
  A natural language processing model aim for extracting name of persons, entities, organizations and locations.

  Jupyter Notebook

  •0•1•0•0•Updated May 13, 2025May 13, 2025

• CEEDER_study

  Public
  Python

  •0•0•0•0•Updated May 7, 2025May 7, 2025

• retraction-indexing-agreement

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 15, 2025Apr 15, 2025

• JCDL-2024-triage-approach

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• text-mining-scholarly-API

  Public
  Python

  •0•1•0•0•Updated Nov 5, 2024Nov 5, 2024

• code_for_the_inclusion_net_manuscript

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Oct 16, 2024Oct 16, 2024

• controversy_dataset_development

  Public
  Scripts used to develop datasets of controversies in science

  Python

  •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

• computable-bibliography

  Public
  Jupyter Notebook

  •1•0•0•0•Updated May 10, 2024May 10, 2024

• openpayments-api

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 5, 2023Dec 5, 2023

• NER-tool-assessment-for-funding-organization-extraction

  Public
  Jupyter Notebook

  •2•0•0•0•Updated May 9, 2023May 9, 2023

• crossref_funder_data_utility

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Apr 28, 2023Apr 28, 2023

• Empirical-Retraction-Lit

  Public
  Empirical Retraction Lit bibliography content, website, and web maintenance info

  metadata

  TeX

  •1•0•0•0•Updated Feb 8, 2023Feb 8, 2023

• RSCS-collaboration

  Public
  Code developed as part of the RSCS collaboration

  Python

  •

  MIT License

  •1•2•2•0•Updated Dec 14, 2022Dec 14, 2022

• author_network_analysis

  Public
  Jupyter Notebook

  •3•1•1•0•Updated Jul 30, 2022Jul 30, 2022

• network_motif_analysis

  Public
  R

  •1•0•0•0•Updated Jun 20, 2022Jun 20, 2022

• Scopus_author_info_tool

  Public
  Python

  •1•0•0•0•Updated Jun 7, 2022Jun 7, 2022

• citation_bias_study

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Feb 2, 2022Feb 2, 2022

• Tagger_Evaluation

  Public
  Evaluation & error analysis of a machine learning tool to detect Randomized Controlled Trials

  Jupyter Notebook

  •0•0•0•0•Updated Dec 18, 2021Dec 18, 2021

• MCTagger-eval

  Public
  Multi-Tagger evaluation

  Python

  •1•0•0•0•Updated Sep 2, 2021Sep 2, 2021

• Retraction-Case-Study-Matsuyama

  Public
  Retraction Case Study Matsuyama

  R

  •1•1•0•0•Updated Jun 18, 2020Jun 18, 2020

• DDI_Evidence_Classification

  Public
  DDI_Ontology_NLP Combine machine learning and knowledge representation to facilitate the process of assessing evidence from studies of drug-drug interaction by using an existing ontology of evidence types (e.g. DDI clinical trials vs. pharmacokinetic trials), as the backbone to develop a series of classifiers that categorize a DDI study’s eviden…

  Jupyter Notebook

  •2•3•0•0•Updated Mar 12, 2020Mar 12, 2020

• Citation_Context_Analysis

  Public
  Conduct a pilot study to implement a citation context analysis system

  Jupyter Notebook

  •1•0•0•0•Updated Aug 16, 2019Aug 16, 2019

• InclusionCriteria

  Public
  code for Machine classification of inclusion criteria from Cochrane systematic reviews

  Jupyter Notebook

  •5•0•1•0•Updated Aug 13, 2019Aug 13, 2019

• Visualization_Tools

  Public
  1•1•0•0•Updated Jul 24, 2019Jul 24, 2019

• DDI_Ontology_NLP

  Public
  Combine machine learning and knowledge representation to facilitate the process of assessing evidence from studies of drug-drug interaction by using an existing ontology of evidence types (e.g. DDI clinical trials vs. pharmacokinetic trials), as the backbone to develop a series of classifiers that categorize a DDI study’s evidence type based on …

  Jupyter Notebook

  •2•3•0•0•Updated Mar 7, 2019Mar 7, 2019