Repositories list

• trimal

  Public
  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

  trimmingmultiple-sequence-alignmentbioinformatics-tool

  C++

  •

  GNU General Public License v3.0

  •47•219•32•3•Updated Aug 15, 2025Aug 15, 2025

• disease_perception

  Public
  Disease PERCEPTION: Personalized Comorbidity Profile Generation

  comorbiditiescomorbidity-network

  JavaScript

  •

  GNU Affero General Public License v3.0

  •1•3•7•6•Updated Aug 12, 2025Aug 12, 2025

• bench_event_api

  Public
  bench_event_api

  openebenchflask

  Python

  •

  GNU Lesser General Public License v2.1

  •3•1•0•1•Updated Aug 11, 2025Aug 11, 2025

• beacon-template-ui

  Public
  EGA - CRG - BSC beacon ui

  JavaScript

  •

  Apache License 2.0

  •3•0•0•0•Updated Aug 11, 2025Aug 11, 2025

• WfExS-backend

  Public
  Workflow Execution Service Backend

  workflowsresearch-objecteosc-life+ 3wfexsejp-rdeosc-entrust

  Python

  •

  Apache License 2.0

  •6•18•23•1•Updated Aug 11, 2025Aug 11, 2025

• tessap

  Public
  TESSAP: A docker shim which submits commands to a GA4GH TES service

  esg

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 11, 2025Aug 11, 2025

• oeb-widgets-graphs

  Public
  Graph widgets for OEB applications

  JavaScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 11, 2025Aug 11, 2025

• openVRE-core-dev

  Public
  Open Virtual Research Environment development version

  JavaScript

  •0•0•3•1•Updated Aug 7, 2025Aug 7, 2025

• openEBench-nuxt-v3

  Public
  OpenEBench Micro Frontends. Nuxt 3 version

  vuenuxtjs2024

  Vue

  •

  Apache License 2.0

  •0•0•13•1•Updated Aug 7, 2025Aug 7, 2025

• oeb-messages

  Public
  OEB messages component

  JavaScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 31, 2025Jul 31, 2025

• openEBench-nuxt

  Public
  Vue Client for the OpenEBench Micro Frontends

  openebench

  JavaScript

  •

  Apache License 2.0

  •2•2•3•12•Updated Jul 24, 2025Jul 24, 2025

• observatory-api

  Public
  Software Observatory API

  fairsoftfastapifair-software+ 1software-metadata

  Python

  •

  MIT License

  •0•1•1•0•Updated Jul 11, 2025Jul 11, 2025

• eucanimage-portal

  Public
  EuCanImage Web Portal

  HTML

  •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• EOSC-ENTRUST_TREFX-Environment1_BSC

  Public
  Demo Environment for EOSC ENTRUST

  Batchfile

  •4•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• treecript

  Public
  A set of python scripts to monitor, collect, and visualize metrics of a given Linux process or a give command line

  steerselixir-steers

  Python

  •

  GNU General Public License v3.0

  •13•4•0•0•Updated Jul 7, 2025Jul 7, 2025

• research-software-etl

  Public
  Automated pipeline for extracting, normalizing, and integrating software metadata from diverse sources

  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Jul 4, 2025Jul 4, 2025

• InSoLiTo

  Public
  Inferring Social Life of Tools (InSoLiTo) is an OpenEBench project that provide guidance on scientific tools worth benchmarking

  openebench

  Python

  •

  MIT License

  •2•2•13•1•Updated Jun 27, 2025Jun 27, 2025

• oeb-visualizations

  Public
  Library of data visualizations for OpenEBench

  vueplotlyjsopenebench

  HTML

  •

  MIT License

  •0•0•2•20•Updated Jun 26, 2025Jun 26, 2025

• github-metadata-api

  Public
  API to extract metadata from a GitHub repository and update files.

  githubnodejsmetadata-extraction+ 1software-metadata

  JavaScript

  •

  MIT License

  •0•1•2•1•Updated Jun 17, 2025Jun 17, 2025

• opeb-pub-enricher

  Public
  OpenEBench metadata citations enricher

  Python

  •

  GNU Lesser General Public License v2.1

  •0•1•0•0•Updated May 28, 2025May 28, 2025

• opeb-enrichers

  Public
  OpenEBench metadata enrichers (citations, GitHub, etc.)

  openebench

  Python

  •

  GNU Lesser General Public License v2.1

  •1•1•3•0•Updated May 28, 2025May 28, 2025

• licenses-mapping

  Public
  A tool to map strings to SPDX licenses names or IDs.

  licensingspdxfastapi

  Python

  •

  Apache License 2.0

  •0•0•3•0•Updated May 27, 2025May 27, 2025

• tesp-api

  Public
  An Open-source implementation of a task execution engine based on the TES standard distributing executions to services exposing Pulsar application.

  Python

  •

  MIT License

  •5•0•0•0•Updated May 21, 2025May 21, 2025

• oeb-docker-compose

  Public
  Docker Compose Files for the OpenEBench Landscape

  frontendopenebench

  Apache License 2.0

  •1•1•0•0•Updated May 20, 2025May 20, 2025

• vre-process_nextflow-executor

  Public
  Nexflow workflow job executor (for OpenEBench VRE installation)

  wrappernextflowvre+ 1openebench

  Python

  •

  Apache License 2.0

  •1•0•8•0•Updated May 19, 2025May 19, 2025

• InSoLiToAPI

  Public
  API of InSoLiTo where you can query a tool via API GET and it displays it in the webpage

  JavaScript

  •0•0•0•0•Updated May 19, 2025May 19, 2025

• software-id-benchmark

  Public
  Benchmarking suite for evaluating software metadata identity resolution using language models

  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated May 14, 2025May 14, 2025

• web_status

  Public
  Webs status collection

  HTML

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated May 12, 2025May 12, 2025

• wfexs_ega_fetcher

  Public
  WfExS-backend EGA fetcher

  Apache License 2.0

  •0•0•0•0•Updated Apr 18, 2025Apr 18, 2025

• hello-workflows

  Public
  Repository to store toy "hello world"-like sample workflows for different workflow engines. Mainly to be consumed by WfExS tests

  Nextflow

  •

  MIT License

  •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025