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@immunomethylomics Immunomethylomics Working Group

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    12 repositories

    • FlowSorted.BloodExtended.EPIC

      Public
      A new extended cell deconvolution for peripheral blood
      R
      •
      Other
      •4•18•2•0•Updated Feb 28, 2025Feb 28, 2025

    • FlowSorted.Blood.EPIC

      Public
      This package includes a new cell reference for adult peripheral blood deconvolution arrayed using Illumina HumanMethylationEPIC
      HTML
      •5•8•2•0•Updated May 18, 2023May 18, 2023

    • FlowSorted.CordBloodCombined.450k

      Public
      This package includes a combination of four cell references for umbilical cord blood deconvolution using IlluminaHumanMethylation arrays 450K and EPIC
      R
      •0•0•0•0•Updated Jan 17, 2022Jan 17, 2022

    • analysis_FlowSorted.BloodExtended.EPIC

      Public
      Code for the analysis included in the manuscript. Data is available on GEO.
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 30, 2021Aug 30, 2021

    • IDOL

      Public
      IDentifying Optimal DNA methylation Libraries (IDOL)
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jul 1, 2020Jul 1, 2020

    • OxyBSpar

      Public
      Optimized analysis of 5hmC using OxyBS
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 29, 2020May 29, 2020

    • preprocessing

      Public
      For use for the group
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 2, 2020Mar 2, 2020

    • Analysis-UBC-references

      Public
      Integrating and improving UBC deconvolution
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 22, 2019Mar 22, 2019

    • Analysis_FlowSorted.Blood.EPIC

      Public
      This repository contains all the code used for the analysis in Salas et al. 2018 Genome Biology
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 30, 2019Jan 30, 2019

    • immunomethylomics.github.io

      Public
      Public facing website for the Immunomethylomics working group
      CSS
      •
      MIT License
      •1•1•0•0•Updated Nov 10, 2016Nov 10, 2016

    • GitHub_resources

      Public
      Resources and training on how to use Git and GitHub
      1•1•0•0•Updated Oct 28, 2016Oct 28, 2016

    • methyLiftover

      Public
      A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set
      R
      •14•0•2•0•Updated Feb 12, 2016Feb 12, 2016