Repositories list

• african_genomics_medicine_portal

  Public
  This is the African Genomic Medicine Portal that provides information about African genomics and variation with regards to pharmocology and disease. AGMP

  django

  JavaScript

  •4•1•18•0•Updated Aug 13, 2025Aug 13, 2025

• afpo

  Public
  AfPO: African Population Ontology

  Makefile

  •0•2•5•0•Updated Jul 28, 2025Jul 28, 2025

• h3agwas

  Public
  GWAS Pipeline for H3Africa

  Nextflow

  •

  Other

  •67•111•11•0•Updated May 21, 2025May 21, 2025

• TADA

  Public
  TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region

  Nextflow

  •

  MIT License

  •14•22•33•0•Updated May 14, 2025May 14, 2025

• h3agwas-docker

  Public
  Dockerfile

  •1•5•0•0•Updated Mar 16, 2025Mar 16, 2025

• h3agwas-examples

  Public
  C++

  •

  Apache License 2.0

  •5•11•0•0•Updated Mar 15, 2025Mar 15, 2025

• agvd-docs

  Public
  Documentation for AGVD users

  Jupyter Notebook

  •

  MIT License

  •0•1•1•0•Updated Jan 16, 2025Jan 16, 2025

• genesis2

  Public
  Implementation of the Genesis 2 tool

  Java

  •

  MIT License

  •0•0•25•0•Updated Nov 24, 2024Nov 24, 2024

• h3abionet.github.io

  Public
  GitHub Documentation

  0•0•0•0•Updated Nov 24, 2024Nov 24, 2024

• chipimputation

  Public
  Genotype Imputation Pipeline for H3Africa

  nextflowbioinformatics-pipelineimputation

  Nextflow

  •

  MIT License

  •22•21•4•1•Updated Nov 5, 2024Nov 5, 2024

• h3aphenstds

  Public
  MIT License

  •2•2•0•0•Updated Jun 3, 2024Jun 3, 2024

• HPCBio-Refgraph_pipeline

  Public
  Shell

  •6•0•10•0•Updated Feb 26, 2024Feb 26, 2024

• african_microbiome_portal

  Public
  JavaScript

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Oct 30, 2023Oct 30, 2023

• node-accreditation

  Public
  Collection of scripts and items for node accreditation

  Nextflow

  •

  MIT License

  •2•0•0•0•Updated Aug 16, 2023Aug 16, 2023

• african_microbiome_portal_data

  Public
  Raw and corrected data with correction python notebook

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 3, 2023Jul 3, 2023

• vcfreport

  Public
  Produces stats on a vcf panel

  Nextflow

  •

  Apache License 2.0

  •1•1•0•0•Updated Feb 3, 2023Feb 3, 2023

• african_microbiome_portal_docker

  Public
  General Docker Configuration

  Dockerfile

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 21, 2022Nov 21, 2022

• imputationserver-docker

  Public
  Docker Image for Michigan Imputation Server

  Dockerfile

  •13•0•0•0•Updated Oct 21, 2022Oct 21, 2022

• FAIR_software_checklist

  Public
  FAIR Software Checklist

  0•0•0•0•Updated Oct 7, 2022Oct 7, 2022

• uct-microbiome-2017

  Public
  Schedule and links to slides and tutorials of the UCT microbiome 2017 workshop

  Ruby

  •0•0•0•0•Updated Oct 7, 2022Oct 7, 2022

• Feature-Engineering

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Aug 23, 2022Aug 23, 2022

• cvd

  Public
  Phenotype harmonization pipeline

  Python

  •

  MIT License

  •2•3•0•0•Updated May 27, 2022May 27, 2022

• dec-2020-hackathon-stream1

  Public
  Nextflow

  •

  MIT License

  •1•1•0•1•Updated May 16, 2022May 16, 2022

• popfreqs

  Public
  Nextflow

  •

  MIT License

  •2•1•0•0•Updated Apr 14, 2022Apr 14, 2022

• web-themes

  Public
  Base themes for web projects

  MIT License

  •0•0•0•0•Updated Oct 20, 2021Oct 20, 2021

• H3ABioNet-ML-glossary

  Public
  The ML Glossary developed by H3ABioNet

  HTML

  •5•0•1•0•Updated Sep 7, 2021Sep 7, 2021

• chipimputation_evaluate_chips

  Public
  Nextflow

  •

  MIT License

  •2•0•0•0•Updated Sep 3, 2021Sep 3, 2021

• H3ABionet-SOPs

  Public
  Standard operating procedures for H3ABionet data processing and analyses

  HTML

  •22•11•3•1•Updated Aug 30, 2021Aug 30, 2021

• chipimputation_test_data

  Public
  Nextflow

  •1•0•0•0•Updated Jul 6, 2021Jul 6, 2021

• h3ameta

  Public
  H3ABioNet Metagenomics Workflow

  HTML

  •5•4•2•2•Updated Apr 3, 2021Apr 3, 2021