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    9 repositories

    • selink

      Public
      Optimized window-based estimation of haplotype tests for positive selection
      C
      •
      GNU General Public License v3.0
      •1•4•1•0•Updated Jun 27, 2025Jun 27, 2025

    • CNN_aDNA

      Public
      Slim
      •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • popCell_SARS-CoV-2

      Public
      Code repository for "Environmental and genetic drivers of population differences in SARS-CoV-2 immune responses" by Aquino et al.
      R
      •
      MIT License
      •0•3•0•0•Updated Mar 29, 2023Mar 29, 2023

    • Genetic_Adapt_Pathogens_aDNA

      Public
      R
      •0•0•0•0•Updated Oct 21, 2022Oct 21, 2022

    • ADAD

      Public
      SLiM parameter files for simulations in Cuadros-Espinoza et al. bioRxiv 2021
      Creative Commons Zero v1.0 Universal
      •0•3•0•0•Updated Aug 25, 2021Aug 25, 2021

    • ABCnumSweeps

      Public
      Scripts used in Laval et al., Genetics 2021 to estimate the number of selective sweeps by ABC
      Perl
      •0•0•0•0•Updated Aug 16, 2021Aug 16, 2021

    • PopDiff_MonocyteIAV

      Public
      Repository associated with the following manuscript: Basal Expression of Interferon-Stimulated Genes Drives Population Differences in Monocyte Susceptibility to Influenza Infection
      R
      •
      MIT License
      •2•0•0•0•Updated Apr 2, 2021Apr 2, 2021

    • SLiM_aDNA_selection

      Public
      Forward-in-time computer simulations to assess selection at the SNP level using frequencies from aDNA data
      R
      •0•6•0•0•Updated Feb 3, 2021Feb 3, 2021

    • evoceania

      Public
      Scripts developed and used in Choin*, Mendoza-Revilla*, Arauna* et al., Nature 2021
      Smarty
      •1•4•0•0•Updated Dec 11, 2020Dec 11, 2020