Repositories list

• cocopye

  Public
  Feature-based prediction of genome quality indices

  bioinformaticsmetagenomics

  Python

  •

  GNU General Public License v3.0

  •0•2•1•0•Updated Jul 17, 2024Jul 17, 2024

• cocopye-database

  Public
  Python

  •0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

• Read-SpaM

  Public
  Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

  C++

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated May 10, 2021May 10, 2021

• mPathy

  Public
  Ultrafast pathway reconstruction from metagenomic and metatranscriptomic reads

  R

  •

  Other

  •0•1•0•0•Updated Jun 29, 2017Jun 29, 2017

• meander

  Public
  R package for differential expression analysis of metatranscriptomic count data

  HTML

  •

  GNU Affero General Public License v3.0

  •0•1•0•0•Updated Jun 17, 2016Jun 17, 2016

• meander-data

  Public
  Data for testing the R package 'meander'

  0•0•0•0•Updated Jun 9, 2016Jun 9, 2016

• uproc

  Public
  Tools for ultra-fast protein sequence classification.

  C

  •

  GNU Lesser General Public License v3.0

  •2•5•7•0•Updated Apr 21, 2016Apr 21, 2016

• hivi

  Public
  HiVi - hierarchical visualization of gene lists

  Java

  •0•0•0•0•Updated Jul 1, 2015Jul 1, 2015

• marvis-graph

  Public
  Detection of novel pathways through integrative analysis of metabolic and transcriptomic data

  Java

  •0•0•0•0•Updated Jan 15, 2015Jan 15, 2015