Repositories list

• globinizer

  Public
  Checks whether datasets are ready for GloBI indexing

  Shell

  •

  MIT License

  •2•1•0•0•Updated Aug 16, 2025Aug 16, 2025

• globalbioticinteractions.github.io

  Public
  source files for GloBI website

  HTML

  •

  MIT License

  •14•9•7•9•Updated Aug 15, 2025Aug 15, 2025

• beefunc

  Public
  configuration for GloBI to index Aubouin, L., Genoud, D., Givord-Coupeau, B. et al. BeeFunc, a comprehensive trait database for French bees. Sci Data 12, 1302 (2025). https://doi.org/10.1038/s41597-025-05626-0

  TeX

  •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

• elton

  Public
  Access, review and index existing species interaction datasets

  Java

  •

  GNU General Public License v3.0

  •2•5•19•0•Updated Jul 31, 2025Jul 31, 2025

• tetra-eu

  Public
  GloBI configuration to index: Maiorano, Luigi et al. (2020), Data from: Tetra-EU 1.0: a species-level trophic meta-web of European tetrapods, Dryad, Dataset, https://doi.org/10.5061/dryad.jm63xsj7b

  0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

• limbu2025

  Public
  configuration to let GloBI index data associated with S. Pehim Limbu, S.L. Stürmer, G. Zahn, C.A. Aguilar-Trigueros, N. Rogers, & V.B. Chaudhary, Climate-linked biogeography of mycorrhizal fungal spore traits, Proc. Natl. Acad. Sci. U.S.A. 122 (29) e2505059122, https://doi.org/10.1073/pnas.2505059122 (2025).

  0•0•0•0•Updated Jul 28, 2025Jul 28, 2025

• taxon-graph-builder

  Public
  Builder for Global Biotic Interactions Taxon Graph

  Makefile

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jul 26, 2025Jul 26, 2025

• globalbioticinteractions

  Public
  Global Biotic Interactions provides access to existing species interaction datasets

  bioinformaticsparasitesbiology+ 11dietecologybiodiversitydiseasesetl-frameworkfood-websecoinformatics+ 4

  Java

  •

  GNU General Public License v3.0

  •17•134•367•1•Updated Jul 26, 2025Jul 26, 2025

• globi-server-scripts

  Public
  bash scripts used for GloBI server

  Shell

  •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• homebrew-globi

  Public
  Formula to help install GloBI tools on Mac OS

  Ruby

  •

  MIT License

  •0•0•0•0•Updated Jul 15, 2025Jul 15, 2025

• nomer

  Public
  maps identifiers and names to other identifiers and names

  HTML

  •

  GNU General Public License v3.0

  •4•22•70•0•Updated Jul 15, 2025Jul 15, 2025

• cmnz

  Public
  Configuration to help index species interactions records associated with records of the Canterbury Museum, Christchurch, New Zealand.

  0•0•0•0•Updated Jul 11, 2025Jul 11, 2025

• trophiCH

  Public
  index configuration to help GloBI index https://github.com/globalbioticinteractions/globalbioticinteractions/issues/1083

  0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• world-spider-traits

  Public
  GloBI configuration to help index World Spider Traits Database

  Creative Commons Zero v1.0 Universal

  •0•0•1•0•Updated Jul 9, 2025Jul 9, 2025

• mycodb

  Public
  Data from: MycoDB, a global database of plant response to mycorrhizal fungi

  Creative Commons Zero v1.0 Universal

  •0•0•2•0•Updated Jun 30, 2025Jun 30, 2025

• ucsb-izc

  Public
  University of California Santa Barbara Invertebrate Zoology Collection

  0•0•2•0•Updated Jun 26, 2025Jun 26, 2025

• unhc

  Public
  Configuration to help index University of New Hampshire Collection of Insects and other Arthropods by Global Biotic Interactions

  0•0•1•0•Updated Jun 26, 2025Jun 26, 2025

• unhc-unhc

  Public
  0•0•1•0•Updated Jun 26, 2025Jun 26, 2025

• dopi

  Public
  index configuration to help GloBI index The Database of Pollinator Interactions (DoPI) documents British pollinator-plant associations at https://www.sussex.ac.uk/lifesci/ebe/dopi

  0•0•3•0•Updated Jun 23, 2025Jun 23, 2025

• globi-taxon-names

  Public
  list of manual taxonomic name mappings and taxonomic stop words

  MIT License

  •0•0•14•0•Updated Jun 19, 2025Jun 19, 2025

• template-dataset

  Public template
  Template species interaction data repository compatible with globalbioticinteractions.org

  biologyspeciesinteractions+ 4ecologybioticglobalbioticinteractionsglobi

  22•8•0•0•Updated Jun 16, 2025Jun 16, 2025

• name-alignment-template

  Public template
  align names with known taxonomic resources

  Creative Commons Zero v1.0 Universal

  •6•3•5•0•Updated Jun 9, 2025Jun 9, 2025

• fred

  Public
  configuration to help index Iversen CM et al. 2021. Fine-Root Ecology Database (FRED): A Global Collection of Root Trait Data with Coincident Site, Vegetation, Edaphic, and Climatic Data, Version 3. Oak Ridge National Laboratory, Tennessee, U.S.A. Access on-line at: https://doi.org/10.25581/ornlsfa.014/1459186.

  0•0•0•0•Updated Jun 9, 2025Jun 9, 2025

• AMNH-hymenoptera

  Public
  0•0•0•0•Updated Jun 6, 2025Jun 6, 2025

• inouyeFlyVisit

  Public
  index configuration for Inouye, David (2017). An Access database of records collated from the literature about flies pollinating or at least visiting flowers, updated 2017. https://doi.org/10.13016/M2SZ73 http://hdl.handle.net/1903/19193

  0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

• klecka2018

  Public
  index configuration to help index Klecka J, Hadrava J, Biella P, Akter A. 2018. Flower visitation by hoverflies (Diptera: Syrphidae) in a temperate plant-pollinator network. PeerJ 6:e6025 https://doi.org/10.7717/peerj.6025; related to https://github.com/globalbioticinteractions/globalbioticinteractions/issues/1074

  0•0•0•0•Updated Jun 4, 2025Jun 4, 2025

• OBservData

  Public
  Crop Pollination Database

  R

  •

  MIT License

  •4•0•0•0•Updated Jun 3, 2025Jun 3, 2025

• boreux2019

  Public
  index configuration for Boreux, Virginie; Klein, Alexandra-Maria (2019). Global pollinator database. figshare. Dataset. https://doi.org/10.6084/m9.figshare.9980471.v1 https://github.com/globalbioticinteractions/globalbioticinteractions/issues/1073

  0•0•0•0•Updated Jun 3, 2025Jun 3, 2025

• russo2022

  Public
  index configuration for Russo, Laura; Fitzpatrick, Una; Larkin, Michelle et al. (2022). Database of plant-flower visitor interactions from Ireland [Dataset]. Dryad. https://doi.org/10.5061/dryad.kwh70rz47 https://github.com/globalbioticinteractions/globalbioticinteractions/issues/1072

  0•0•0•0•Updated Jun 3, 2025Jun 3, 2025

• neofrugivory

  Public
  Configuration to help index: Fuzessy, Lisieux, and Marco Aurélio Pizo. 2025. “ NeoFrugivory: A Comprehensive Database for Frugivory Interactions and Functional Traits in the Neotropics.” Ecology 106(3): e70049. https://doi.org/10.1002/ecy.70049

  0•0•0•0•Updated May 15, 2025May 15, 2025