Fred Hutch Data Science Lab WILDS

All

34 repositories

wilds-docker-library
Public
Collection of Docker images for use in WILDS bioinformatics workflows
containers wilds-docker
Dockerfile
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MIT License
•4•2•5•2•Updated Sep 22, 2025Sep 22, 2025
registry
Public
WILDS Repo Registry
Python
•0•0•1•0•Updated Sep 21, 2025Sep 21, 2025
getwilds.github.io
Public
WILDS Website
Lua
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Creative Commons Zero v1.0 Universal
•0•0•5•0•Updated Sep 20, 2025Sep 20, 2025
wilds-wdl-library
Public
Collection of bioinformatics-related WDL workflow for use in WILDS
WDL
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MIT License
•0•0•17•3•Updated Sep 20, 2025Sep 20, 2025
bs-wilds
Public
Custom WILDS Bootstrap theme
HTML
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Other
•0•0•0•0•Updated Sep 19, 2025Sep 19, 2025
sprocket-wdl-tutorial
Public
Tutorial WDL's for 2025 OCDO Summer Hybrid Coworking Day
WDL
•0•0•0•0•Updated Jul 23, 2025Jul 23, 2025
proofr
Public
Client for the PROOF API
r-package wilds-r
R
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Other
•11•1•1•0•Updated Jul 9, 2025Jul 9, 2025
dasl-quarto
Public
Quarto template for FHCC DaSL HTML report
HTML
•0•0•0•2•Updated Jun 5, 2025Jun 5, 2025
ww-star-deseq2
Public
WILDS WDL workflow that executes STAR+DESeq2 on RNAseq data
wdl-workflow wilds-wdl
WDL
•
MIT License
•0•0•2•0•Updated May 29, 2025May 29, 2025
ww-saturation
Public
Self-contained WDL workflow that performs saturation mutagenesis analysis
WDL
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MIT License
•2•0•0•0•Updated Apr 14, 2025Apr 14, 2025
sixtyfour
Public
🚚 AWS for Data Scientists
aws r aws-billing rstats r-pkg wilds-r
R
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Other
•2•22•28•2•Updated Apr 10, 2025Apr 10, 2025
rules
Public
WILDS Rules
Python
•0•0•0•0•Updated Mar 22, 2025Mar 22, 2025
guide
Public
WILDS Dev Guide
documentation
Lua
•
Creative Commons Zero v1.0 Universal
•1•3•9•1•Updated Mar 11, 2025Mar 11, 2025
.github
Public
0•0•1•0•Updated Mar 3, 2025Mar 3, 2025
ww-salmon
Public
Self-contained WDL workflow that uses the Salmon RNA-seq computational tool.
wdl-workflow wilds-wdl
WDL
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MIT License
•0•0•0•0•Updated Mar 1, 2025Mar 1, 2025
rls
Public
Row Level Security Functions for PostgreSQL and Redshift
postgresql rstats redshift row-level-security wilds-r
R
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Other
•0•2•6•2•Updated Feb 4, 2025Feb 4, 2025
makefiles
Public
Makefile templates for WILDS projects
utilities
Makefile
•0•0•1•0•Updated Feb 3, 2025Feb 3, 2025
oncarto
Public
🗺 A Map Room
R
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Other
•0•2•4•0•Updated Jan 17, 2025Jan 17, 2025
ww-shapemapper
Public
Self-contained WDL workflow that uses Shapemapper
wdl-workflow wilds-wdl
WDL
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MIT License
•0•0•0•0•Updated Jan 9, 2025Jan 9, 2025
proof
Public
MIT License
•0•0•25•0•Updated Dec 30, 2024Dec 30, 2024
ww-demo-workflows
Public
A repo containing workflows written in WDL to test using the Fred Hutch Cromwell configuration.
wdl-workflow wilds-wdl
WDL
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MIT License
•1•1•0•1•Updated Dec 16, 2024Dec 16, 2024
ww-sourmash
Public
Self-contained WDL workflow that uses Sourmash to perform similarity searches between sequence files.
wdl-workflow wilds-wdl
WDL
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MIT License
•0•0•0•0•Updated Dec 12, 2024Dec 12, 2024
personas
Public
CSS
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Creative Commons Attribution 4.0 International
•0•1•0•0•Updated Oct 7, 2024Oct 7, 2024
badges
Public
WILDS Badges
utilities
HTML
•0•0•1•0•Updated Sep 25, 2024Sep 25, 2024
cancerprof
Public
API Client for State Cancer Profiles
wilds-r
R
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Other
•2•2•17•1•Updated Sep 25, 2024Sep 25, 2024
rcromwell
Public
R client for interacting with Cromwell with WDL workflows
workflow r workflow-engine rstats r-package workflow-management wilds-r
R
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Other
•2•4•8•0•Updated Sep 17, 2024Sep 17, 2024
ww-cell-ranger
Public
A basic starting point for a cell ranger workflow
wdl-workflow wilds-wdl
WDL
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MIT License
•0•0•0•0•Updated Jul 8, 2024Jul 8, 2024
ww-fastq-to-cram
Public
Self-contained WDL workflow that converts a WGS FASTQ file into an unmapped CRAM file
wdl-workflow wilds-wdl
WDL
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MIT License
•0•0•0•0•Updated Jul 8, 2024Jul 8, 2024
ww-vc-trio
Public
Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them
wdl-workflow wilds-wdl
WDL
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MIT License
•2•0•0•0•Updated Jul 8, 2024Jul 8, 2024
wdl-101
Public
This is the repository for the WDL and JSON files accompanying the WDL 101 course.
training wdl-workflow
WDL
•0•1•0•1•Updated Apr 10, 2024Apr 10, 2024