Repositories list

• esi-conda

  Public
  Collection of pre-configured conda environments available on the ESI HPC cluster

  condaneuroscienceconda-environment

  Jupyter Notebook

  •0•1•1•0•Updated Aug 13, 2025Aug 13, 2025

• vscode-remote-hpc

  Public
  Connect VS Code to non-interactive HPC compute nodes managed by SLURM

  Shell

  •4•1•0•0•Updated Aug 12, 2025Aug 12, 2025

• slurmfun

  Public
  MATLAB tools to submit jobs into SLURM

  hpcmatlabslurm+ 1cluster-computing

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•1•0•Updated Jun 5, 2025Jun 5, 2025

• acme

  Public
  Asynchronous Computing Made ESI

  asynchronoushigh-performance-computingpython+ 1parallel

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•12•0•0•Updated Jun 4, 2025Jun 4, 2025

• marimo

  Public
  A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. All in a modern, AI-native editor.

  Python

  •

  Apache License 2.0

  •638•0•0•0•Updated May 27, 2025May 27, 2025

• syncopy

  Public
  Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data

  analysisneurosciencecomputational-neuroscience+ 4brainecogspectral-methodssystems-neuroscience

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •15•53•32•6•Updated Mar 6, 2025Mar 6, 2025

• nixos-workshop-clients

  Public
  This repository will contain the instructions for setting up a bootable nixos, which contains a user account as an auto login. The steps are provided in the README.

  Nix

  •

  MIT License

  •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• acme-demo

  Public
  Demo and Examples showing how to use ACME

  hpcparallel-computinguser-friendly

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

• oephys2nwb

  Public
  Export Open Ephys binary data to NWB 2.0

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2•3•2•0•Updated Oct 23, 2023Oct 23, 2023

• ARCADE

  Public
  ARCADE is a modular suite of Applications for Real-time Control of subject Actions and stimulus Diplay for behavioral Experiments.

  matlab-toolboxexperimental-designresearch-software

  MATLAB

  •

  GNU General Public License v3.0

  •4•4•21•1•Updated Aug 15, 2023Aug 15, 2023

• esi-syncopy-feedstock

  Public
  A conda-smithy repository for esi-syncopy.

  BSD 3-Clause "New" or "Revised" License

  •4•1•0•0•Updated Jul 28, 2023Jul 28, 2023

• rear

  Public
  Relax-and-Recover - Linux bare metal disaster recovery and system migration solution (cfr. mksysb, ignite)

  Shell

  •

  GNU General Public License v3.0

  •268•0•0•0•Updated Jun 15, 2023Jun 15, 2023

• StimServer

  Public
  C++ source code of StimServer for ARCADE (visual stimulation)

  C++

  •

  GNU Lesser General Public License v3.0

  •2•1•4•0•Updated May 11, 2022May 11, 2022

• DeepLabCut

  Public
  Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals

  Python

  •

  GNU Lesser General Public License v3.0

  •1.7k•0•0•0•Updated Apr 12, 2022Apr 12, 2022

• esi-acme-feedstock

  Public
  A conda-smithy repository for esi-acme.

  BSD 3-Clause "New" or "Revised" License

  •3•0•0•0•Updated Mar 2, 2022Mar 2, 2022

• EyeLinkServer

  Public
  C++ source code of EyeLinkServer for ARCADE

  C++

  •

  GNU General Public License v3.0

  •2•1•1•0•Updated Mar 1, 2022Mar 1, 2022

• NidaqServer

  Public
  C++ source code of NidaqServer for ARCADE (digital I/O)

  C++

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Feb 14, 2022Feb 14, 2022

• conda2pip

  Public
  Convert conda environment files to pip-compliant requirements.txt files

  0•0•0•0•Updated Jan 24, 2022Jan 24, 2022

• staged-recipes

  Public
  A place to submit conda recipes before they become fully fledged conda-forge feedstocks

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5.4k•0•0•0•Updated Jan 19, 2022Jan 19, 2022

• afni

  Public
  Official AFNI source and documentation

  C

  •112•0•0•0•Updated Sep 28, 2021Sep 28, 2021

• ANTs

  Public
  Advanced Normalization Tools (ANTs)

  C++

  •

  Other

  •389•0•0•0•Updated Sep 28, 2021Sep 28, 2021

• syncopy-matlab

  Public
  MATLAB interface for Syncopy files

  MATLAB

  •

  Other

  •1•1•2•0•Updated Aug 10, 2021Aug 10, 2021

• ungoogled-chromium

  Public
  Google Chromium, sans integration with Google - PPC64LE FORK

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •969•0•0•0•Updated Jun 21, 2021Jun 21, 2021

• phy

  Public
  phy: interactive visualization and manual spike sorting of large-scale ephys data

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •172•0•0•0•Updated Apr 6, 2021Apr 6, 2021

• phylib

  Public
  Lightweight electrophysiological data analysis library

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •28•0•0•0•Updated Mar 18, 2021Mar 18, 2021

• chromium_power

  Public
  Patches that allow Chromium to build and run on ppc64le

  Python

  •

  GNU General Public License v3.0

  •8•0•0•0•Updated Dec 3, 2020Dec 3, 2020

• PyTables

  Public
  A Python package to manage extremely large amounts of data

  C

  •

  BSD 3-Clause "New" or "Revised" License

  •276•0•0•0•Updated Aug 12, 2020Aug 12, 2020

• tensorflow

  Public
  Tensorflow modified to run CPU-only on IBM POWER7 BE machines

  C++

  •

  Apache License 2.0

  •75k•0•0•0•Updated Mar 26, 2020Mar 26, 2020