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    47 repositories

    • moseq2-model

      Public
      Python scripts for linking kinect-extraction to pybasicbayes
      Python
      •
      Other
      •4•1•7•1•Updated Aug 5, 2025Aug 5, 2025

    • jax-moseq

      Public
      Python
      •
      Other
      •8•7•3•2•Updated Aug 4, 2025Aug 4, 2025

    • state-moseq

      Public
      Python
      •
      Other
      •1•0•0•0•Updated Jul 30, 2025Jul 30, 2025

    • moseq2-pca

      Public
      Code for computing pcs from extracted data to submit for modeling
      Python
      •
      Other
      •4•0•3•1•Updated Jul 25, 2025Jul 25, 2025

    • keypoint-moseq

      Public
      Python
      •
      Other
      •36•96•24•2•Updated Jul 21, 2025Jul 21, 2025

    • moseq2-viz

      Public
      Visualization toolbox for MoSeq2
      Python
      •
      Other
      •5•1•5•1•Updated Jun 2, 2025Jun 2, 2025

    • Brann_olfactory_dorsoventral

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 1, 2025May 1, 2025

    • orbbec-acquire

      Public
      Toolkit to acquire data using Orbbec Femto cameras.
      Python
      •
      Other
      •3•2•0•0•Updated Apr 6, 2025Apr 6, 2025

    • moseq2-app

      Public
      MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.
      Python
      •
      Other
      •10•35•30•2•Updated Jan 25, 2025Jan 25, 2025

    • ontogeny-of-behavior

      Public
      Repository housing analysis code related to tracking behavior of mice as they age.
      behaviormachine-learningagingmoseq
      Jupyter Notebook
      •2•2•0•1•Updated Oct 15, 2024Oct 15, 2024

    • azure-acquire

      Public
      Toolkit to acquire data using Microsoft Azure camera
      Python
      •
      Other
      •2•0•0•1•Updated Jul 3, 2024Jul 3, 2024

    • moseq2-extract

      Public
      Here it comes...
      Python
      •
      Other
      •7•3•11•0•Updated May 10, 2024May 10, 2024

    • moseq2-docs

      Public
      This documentation is out of date.
      Jupyter Notebook
      •0•5•3•0•Updated Jan 22, 2024Jan 22, 2024

    • striatum-3d-action-selection

      Public
      Contains code to reproduce key figures from "The striatum organizes 3D behavior via moment-to-moment action selection"
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 2, 2023Jun 2, 2023

    • kinect2-nidaq

      Public
      Interface for simultaneous NI-DAQ and Kinect v2 acquisition
      C#
      •
      Other
      •0•0•3•0•Updated Apr 6, 2023Apr 6, 2023

    • cortical-representations-odour-space

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 21, 2023Mar 21, 2023

    • non-neuronal-covid-anosmia

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 18, 2023Mar 18, 2023

    • spontaneous-behavior-reflects-individuality-not-estrous

      Public
      Scripts used for creating the figures for the publication: Mouse spontaneous behavior reflects individual variation rather than estrous state
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 13, 2023Mar 13, 2023

    • dopamine-reinforces-spontaneous-behavior

      Public
      Repository holding the jupyter notebooks and python packages used to generate figures in our paper: "Spontaneous behaviour is structured by reinforcement without explicit reward"
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•9•0•0•Updated Feb 7, 2023Feb 7, 2023

    • Tsukahara_Brann_OSN

      Public
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Dec 18, 2021Dec 18, 2021

    • moseq-vame

      Public
      Variational Animal Motion Embedding
      Python
      •
      GNU General Public License v3.0
      •65•4•0•0•Updated Nov 24, 2020Nov 24, 2020

    • pyparticles

      Public
      Python
      •0•2•6•0•Updated Sep 23, 2020Sep 23, 2020

    • moseq-drugs

      Public
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •5•14•1•0•Updated Sep 2, 2020Sep 2, 2020

    • pyhsmm-autoregressive

      Public
      autoregressive plugin
      Python
      •
      Other
      •28•0•0•0•Updated Aug 31, 2020Aug 31, 2020

    • mongowrapper

      Public
      A wrapper for MongoDB that makes saving and loading NumPy arrays transparent.
      Python
      •8•32•3•3•Updated Aug 1, 2020Aug 1, 2020

    • slurm-gcp

      Public
      Slurm on Google Cloud Platform
      Python
      •
      Apache License 2.0
      •120•0•0•0•Updated Aug 5, 2019Aug 5, 2019

    • luigi

      Public
      Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
      Python
      •
      Apache License 2.0
      •2.4k•0•4•0•Updated Mar 12, 2018Mar 12, 2018

    • Population-coding-in-an-Innately-Relevant-Olfactory-Area

      Public
      MATLAB
      •0•0•0•0•Updated Feb 13, 2017Feb 13, 2017

    • behavior_PirCtx_gonogo

      Public
      Behavior Arduino & Matlab codes
      Arduino
      •0•0•0•0•Updated Jun 12, 2016Jun 12, 2016

    • d_code

      Public
      2Photon Imaging and Electrophysiology Analysis code for the Datta Lab @ HMS
      Jupyter Notebook
      •
      MIT License
      •8•14•0•0•Updated Feb 3, 2016Feb 3, 2016