Repositories list

• converters

  Public
  Python

  •0•1•0•0•Updated Jun 27, 2025Jun 27, 2025

• CCS

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Jun 17, 2025Jun 17, 2025

• CoxLab_Bug_Reporting

  Public template
  MaxQuant and Perseus Bug Reporting

  bioinformaticsbugproteomics+ 4proteomics-databioinformatics-analysisbugreportsproteomics-data-analysis

  1•8•66•0•Updated Mar 19, 2025Mar 19, 2025

• coxdocs

  Public
  HTML

  •3•4•0•1•Updated Nov 28, 2024Nov 28, 2024

• PerseusR

  Public
  R package for easy interop between Perseus and R

  bioinformaticsrproteomics+ 3maxquantinteropperseus

  R

  •

  Other

  •5•14•7•0•Updated Sep 9, 2022Sep 9, 2022

• MaxLynxPaperAnalysis

  Public
  Python

  •0•0•0•0•Updated Jan 11, 2022Jan 11, 2022

• VariationSearchProtocol

  Public
  Python scripts for the manuscript

  Python

  •0•0•0•0•Updated Jun 17, 2021Jun 17, 2021

• tools

  Public
  R

  •1•0•0•1•Updated May 18, 2021May 18, 2021

• DIAtools

  Public
  Python

  •5•6•2•0•Updated Mar 25, 2021Mar 25, 2021

• perseuspy

  Public
  Integration between Perseus and Python

  pythonbioinformaticsperseus+ 1maxquant

  Python

  •

  MIT License

  •5•9•0•0•Updated Dec 29, 2020Dec 29, 2020

• PluginInterop

  Public
  Enables working with external scripts and tools from within Perseus

  pythonbioinformaticsr+ 4interopperseusproteomicsmaxquant

  C#

  •5•5•1•0•Updated Nov 5, 2020Nov 5, 2020

• wiNNer

  Public
  Sliding-window-based regression model for prediction of fragment intensities using Python and Keras

  Python

  •0•2•1•0•Updated Sep 19, 2019Sep 19, 2019

• PluginUpperCase

  Public
  Simple Perseus plugin to make string column upper case

  C#

  •1•0•0•0•Updated Apr 11, 2019Apr 11, 2019

• PluginDependentPeptides

  Public
  Dependent peptide search result import for Perseus

  C#

  •1•2•1•0•Updated Apr 11, 2019Apr 11, 2019

• PluginTutorial

  Public
  Tutorial for Perseus plugin development

  C#

  •2•2•1•0•Updated Jul 11, 2018Jul 11, 2018