Repositories list

• workbench-cli

  Public
  Workbench-cli is a command-line shell and scripting interface for Galaxy, Irida and other various popular bioinformatics platforms, envisioned to be a Swiss Army knife designed to make life easier for those who love hacking away at the command prompt.

  cligalaxy-projectirida

  Python

  •

  Apache License 2.0

  •1•0•8•4•Updated Feb 8, 2023Feb 8, 2023

• irida-plugin-sars-cov-2-illumina

  Public
  irida-plugin

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 11, 2022Oct 11, 2022

• irida-plugin-sars-cov-2-nanopore

  Public
  The nanopore workflow plugin for sars-cov2

  covid-19sars-cov-2

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 11, 2022Oct 11, 2022

• workbench

  Public
  🐳📊📚 Docker Images tracking the stable Galaxy releases.

  Shell

  •

  MIT License

  •136•0•0•1•Updated Oct 11, 2022Oct 11, 2022

• irida

  Public
  Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

  Java

  •

  Apache License 2.0

  •32•0•0•0•Updated May 20, 2022May 20, 2022

• workbench-deploy

  Public
  IRIDA and Galaxy deployment manifest definitions and scripts

  HTML

  •

  Apache License 2.0

  •1•1•8•0•Updated Feb 16, 2022Feb 16, 2022

• irida-plugin-fastp

  Public
  Java

  •0•0•0•0•Updated Dec 3, 2021Dec 3, 2021

• irida-uploader

  Public
  Sequence file uploader for IRIDA

  Python

  •

  Apache License 2.0

  •13•0•0•0•Updated Dec 3, 2021Dec 3, 2021

• combatsarscov2-docs

  Public
  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Oct 25, 2021Oct 25, 2021

• irida-pipeline-plugins

  Public
  IRIDA pipeline definitions

  Java

  •

  Apache License 2.0

  •0•0•1•0•Updated Sep 9, 2021Sep 9, 2021