The Carpentries Incubator

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208 repositories

python-ecology-lesson
Public
Redesigning the Data Analysis and Visualization in Python for Ecologists lesson
python data-visualization english lesson ecology pre-alpha datacarpentry carpentries-incubator
Jupyter Notebook
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Other
•312•1•0•2•Updated Sep 22, 2025Sep 22, 2025
bioc-scrnaseq
Public
Single-cell RNAseq materials derived from the 2023 ISMB OSCA workshop in the carpentries workbench format.
rna-seq r english bioconductor lesson single-cell pre-alpha carpentries-incubator
R
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Other
•2•3•4•0•Updated Sep 22, 2025Sep 22, 2025
carpentries-incubator.org
Public
HTML
•7•6•3•2•Updated Sep 22, 2025Sep 22, 2025
green-software-hpc
Public
Green Software Use on HPC
sustainability hpc english lesson alpha green-computing carpentries-incubator hpc-carpentry
Python
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Other
•1•5•0•0•Updated Sep 22, 2025Sep 22, 2025
Natural-language-processing
Public
Fundamentals of natural language processing with Python
python nlp natural-language-processing english lesson pre-alpha carpentries-incubator
Other
•0•3•3•0•Updated Sep 18, 2025Sep 18, 2025
better-research-software
Public
Building Better Research Software
beta english lesson fair research-software fair-software carpentries-incubator
Python
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Other
•17•12•43•0•Updated Sep 18, 2025Sep 18, 2025
lesson-R-packaging
Public
R Packaging
r best-practices beta lesson-materials lessons-page lesson
Other
•10•5•24•2•Updated Sep 17, 2025Sep 17, 2025
machine-learning-biomedical-science
Public
Machine Learning for Biomedical Science
machine-learning english lesson pre-alpha biomedical-data-science r-lang biomedicine carpentries-incubator
R
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Other
•0•0•0•0•Updated Sep 16, 2025Sep 16, 2025
meetings-rse
Public
How to Run a Meeting
english lesson meetings pre-alpha professional-skills carpentries-incubator meetings-enhancement
Other
•1•1•7•0•Updated Sep 16, 2025Sep 16, 2025
targets-workshop
Public
Pre-alpha {targets} workshop
r reproducible-research english lesson pre-alpha
R
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Other
•12•36•23•6•Updated Sep 16, 2025Sep 16, 2025
statistical-inference-for-biology
Public
Statistical Inference for Biology
r statistics biology alpha carpentries-incubator english lesson
R
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Other
•6•3•6•0•Updated Sep 16, 2025Sep 16, 2025
statistical-experimental-design
Public
Statistical Experimental Design
statistics english lesson pre-alpha experimental-design carpentries-incubator
R
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Other
•2•2•0•0•Updated Sep 16, 2025Sep 16, 2025
julia-novice
Public
A lesson exploring the Julia language
programming julia julia-language alpha carpentries-incubator lesson
Julia
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Other
•24•17•13•1•Updated Sep 16, 2025Sep 16, 2025
SDC-BIDS-EEG-EEGLAB
Public
Working with EEGLAB and BIDS-EEG
programming matlab eeg english eeg-signals neuroimaging lesson eeg-data bids pre-alpha
Other
•3•5•1•1•Updated Sep 16, 2025Sep 16, 2025
python-intermediate-development
Public
"Intermediate Research Software Development Skills (Python)" Lesson Material
python training beta software-development lesson training-materials carpentry-lesson intermediate software-design software-engineering-research
TeX
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Other
•73•57•54•1•Updated Sep 16, 2025Sep 16, 2025
blogging-with-hugo-and-github-pages
Public
Carpentries Incubator lesson to learn how to build blog sites with Hugo and GitHub Pages
blog github-pages hugo beta hugo-site english lesson
Other
•1•3•0•0•Updated Sep 16, 2025Sep 16, 2025
good-practices-lesson
Public
Good practices in research software development (without Git)
english lesson pre-alpha research-software-engineering carpentries-incubator
Other
•1•1•24•1•Updated Sep 16, 2025Sep 16, 2025
machine-learning-neural-python
Public
Introduction to artificial neural nets with Python
python machine-learning deep-learning machine beta ml english classification image-classification lesson
Other
•11•6•7•0•Updated Sep 16, 2025Sep 16, 2025
docker-introduction
Public
Reproducible Computational Environments using Containers
docker education containers beta english lesson hacktoberfest carpentries carpentries-incubator helpwanted-list
Python
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Other
•52•52•37•5•Updated Sep 16, 2025Sep 16, 2025
swc-ext-python
Public
Workflows with Python and Git
python english lesson alpha carpentries-incubator helpwanted-list
Python
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Other
•5•1•7•0•Updated Sep 16, 2025Sep 16, 2025
fair-for-leaders
Public
FAIR for leaders
english lesson fair pre-alpha life-sciences carpentries-incubator
Python
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Other
•0•0•0•1•Updated Sep 16, 2025Sep 16, 2025
hermes_metadata_lesson
Public
Data and Metadata in the Humanities: Structures, Schemas, and Standards
metadata english lesson digital-humanities pre-alpha humanities carpentries-incubator
Other
•0•0•0•0•Updated Sep 16, 2025Sep 16, 2025
reproducible-publications-quarto
Public
Introduction to Reproducible Publications with Quarto
r rstudio open-science english project-management lesson alpha quarto reproducible-paper qmd
Other
•26•17•9•0•Updated Sep 16, 2025Sep 16, 2025
SDC-BIDS-dMRI
Public
Introduction to dMRI
python programming neuroimaging lesson bids dwi fsl pre-alpha diffusion-mri tractography
Jupyter Notebook
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Other
•19•26•23•2•Updated Sep 16, 2025Sep 16, 2025
high-dimensional-stats-r
Public
High-dimensional statistics with R
r statistics pre-alpha carpentries-incubator high-dimensional-statistics english lesson
R
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Other
•17•11•0•0•Updated Sep 16, 2025Sep 16, 2025
RDBMS-with-NocoDB-in-the-humanities
Public
Relational Databases with NocoDB
english lesson digital-humanities pre-alpha humanities carpentries-incubator nocodb
R
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Other
•3•1•0•0•Updated Sep 16, 2025Sep 16, 2025
bioc-project
Public
Introduction to the Bioconductor project
r bioconductor hacktoberfest pre-alpha life-sciences carpentries-incubator english lesson
R
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Other
•20•18•6•3•Updated Sep 16, 2025Sep 16, 2025
mgnify-metagenomics
Public
Managing and Retrieving Metagenomics Data with MGnify
english lesson pre-alpha
Other
•1•0•0•1•Updated Sep 16, 2025Sep 16, 2025
hermes_stat_inf_data_vis
Public
Statistical inference and data visualization for the humanities
storytelling data-visualization english statistical-inference lesson pre-alpha carpentries-incubator
Other
•0•0•0•0•Updated Sep 16, 2025Sep 16, 2025
efficient-computing-in-julia
Public
A lesson on efficient computing in the Julia language
julia english lesson pre-alpha carpentries-incubator
Julia
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Other
•0•1•7•1•Updated Sep 16, 2025Sep 16, 2025