WangLab @ U of T

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56 repositories

MorphoDiff
Public
MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions based on perturbation encoding.
Python
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Apache License 2.0
•4•21•0•0•Updated Aug 13, 2025Aug 13, 2025
genomic-FM
Public
genomics genetic-variants foundation-models
Python
•3•29•1•0•Updated Aug 12, 2025Aug 12, 2025
MedRAX2
Public
MedRAX-2
Python
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Apache License 2.0
•138•2•2•2•Updated Aug 12, 2025Aug 12, 2025
Orthrus
Public
Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.
Python
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MIT License
•14•72•1•0•Updated Aug 8, 2025Aug 8, 2025
trl
Public
Train transformer language models with reinforcement learning.
Python
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Apache License 2.0
•2.1k•0•0•0•Updated Aug 8, 2025Aug 8, 2025
MedRAX
Public
MedRAX: Medical Reasoning Agent for Chest X-ray - ICML 2025
agent medical healthcare medical-imaging chest-xray chest-xrays reasoning-agent langchain agentic-framework agentic-ai
Python
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Apache License 2.0
•138•657•4•6•Updated Aug 1, 2025Aug 1, 2025
AMOS-MM-Solution
Public
Solution to the AMOS-MM challenge
Python
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MIT License
•0•10•1•0•Updated Jul 14, 2025Jul 14, 2025
MedSAM2
Public
MedSAM2: Segment Anything in 3D Medical Images and Videos
Python
•
Apache License 2.0
•64•285•3•1•Updated Jul 11, 2025Jul 11, 2025
scGPT
Public
gpt single-cell foundation-model
Jupyter Notebook
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MIT License
•273•1.3k•147•8•Updated Jul 9, 2025Jul 9, 2025
BioReason
Public
BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model
bioinformatics computational-biology dna reasoning foundation-models large-language-models grpo
Jupyter Notebook
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Apache License 2.0
•40•270•4•0•Updated Jun 14, 2025Jun 14, 2025
vLLM
Public
A high-throughput and memory-efficient inference and serving engine for LLMs
Python
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Apache License 2.0
•9.4k•0•0•0•Updated Jun 13, 2025Jun 13, 2025
dnaBLT
Public
DNA Byte Latent Transformer.
Python
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BSD 3-Clause "New" or "Revised" License
•0•2•0•0•Updated Jun 7, 2025Jun 7, 2025
Ctrl-DNA
Public
Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL
Python
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Apache License 2.0
•1•11•1•0•Updated May 28, 2025May 28, 2025
IntegrAO
Public
Integrate Any Omics: Towards genome-wide data integration for patient stratification
Jupyter Notebook
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MIT License
•11•56•1•0•Updated May 19, 2025May 19, 2025
AGILE
Public
AGILE Platform: A Deep Learning-Powered Approach to Accelerate LNP Development for mRNA Delivery
Jupyter Notebook
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MIT License
•7•42•3•0•Updated May 16, 2025May 16, 2025
ECG-FM
Public
An electrocardiogram analysis foundation model.
machine-learning healthcare transformer electrocardiogram foundation-models mimic-iv-ecg physionet2021
Python
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MIT License
•15•176•1•0•Updated May 7, 2025May 7, 2025
MedSAM
Public
Segment Anything in Medical Images
Jupyter Notebook
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Apache License 2.0
•511•3.7k•4•2•Updated May 7, 2025May 7, 2025
MedSAMSlicer
Public
3D Slicer Plugin for Segment anything in medical images
3d-slicer-extension
Python
•27•248•8•2•Updated Apr 7, 2025Apr 7, 2025
scGPT-spatial
Public
Jupyter Notebook
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MIT License
•13•106•8•0•Updated Feb 13, 2025Feb 13, 2025
AgentTutorial
Public
Jupyter Notebook
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Apache License 2.0
•1•9•0•0•Updated Feb 3, 2025Feb 3, 2025
PANORAMA
Public
0•1•0•0•Updated Dec 10, 2024Dec 10, 2024
csc413-2024
Public
Jupyter Notebook
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MIT License
•2•1•0•0•Updated Nov 22, 2024Nov 22, 2024
OCAT
Public
Python
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GNU General Public License v3.0
•3•18•2•0•Updated Oct 22, 2024Oct 22, 2024
BLEEP
Public
Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
Python
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Apache License 2.0
•13•79•1•0•Updated Oct 22, 2024Oct 22, 2024
evlp_xray_vision
Public
Computer vision models for EVLP lung X-ray images.
Python
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MIT License
•0•0•0•0•Updated Jul 2, 2024Jul 2, 2024
CellSeg-Transformers
Public
Python
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Apache License 2.0
•1•14•0•0•Updated May 7, 2024May 7, 2024
U-Mamba
Public
U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation
Python
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Apache License 2.0
•83•848•40•0•Updated Apr 4, 2024Apr 4, 2024
DeepVelo
Public
Python
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MIT License
•9•46•6•3•Updated Feb 7, 2024Feb 7, 2024
Graph-Mamba
Public
Graph-Mamba: Towards Long-Range Graph Sequence Modelling with Selective State Spaces
Python
•36•300•5•0•Updated Feb 2, 2024Feb 2, 2024
BIONIC
Public
Biological Network Integration using Convolutions
Python
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MIT License
•5•62•1•8•Updated Jan 17, 2024Jan 17, 2024