BNediction

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11 repositories

scBoolSeq
Public
scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics
machine-learning bioinformatics scikit-learn computational-biology pandas python3 scrna-seq single-cell-rna-seq boolean-networks
Python
•1•13•1•0•Updated Aug 13, 2025Aug 13, 2025
bonesis
Public
Synthesis and Reprogramming of Most Permissive Boolean Networks
systems-biology synthesis answer-set-programming boolean-networks
Python
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Other
•2•13•1•0•Updated Jul 7, 2025Jul 7, 2025
bonesistools
Public
BoNesisTools is a python package proposing bioinformatics tools for upstream and downstream analysis of BoNesis framework
python bioinformatics systems-biology rnaseq single-cell atacseq boolean-networks anndata gene-regulatory-networks mudata
Python
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Other
•0•0•0•0•Updated Jul 1, 2025Jul 1, 2025
mpbn
Public
Brief Python implementation of Most Permissive Boolean Networks
Python
•2•19•0•0•Updated Jan 29, 2025Jan 29, 2025
scBoolSeq-supplementary
Public
Notebooks demonstrating scBoolSeq for scRNA-Seq binarization and synthetic generation
Jupyter Notebook
•0•0•0•0•Updated Jun 28, 2024Jun 28, 2024
bnediction.github.io
Public
BNediction webpage
HTML
•0•0•0•0•Updated Jun 14, 2024Jun 14, 2024
cegar-bonesis
Public
CEGAR for universal properties over minimal trap spaces of Boolean networks
Python
•0•2•0•0•Updated Jul 11, 2023Jul 11, 2023
reprogramming-with-bonesis
Public
Executable paper and data demonstrating marker reprogramming of Boolean networks with BoNesis
control answer-set-programming attractors reprogramming boolean-networks minimal-trap-spaces most-permissive
TeX
•0•0•0•0•Updated Mar 24, 2023Mar 24, 2023
mpbn-sim
Public archive
Simulation of Most Permissive Boolean networks
Python
•0•1•0•0•Updated Dec 1, 2022Dec 1, 2022
profile_binr
Public archive
PROFILE RNA-seq binarization technique.
bioinformatics computational-biology pandas python3 rna-seq-analysis binarization single-cell-rna-seq rpy2 normalisation
Python
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BSD 3-Clause "New" or "Revised" License
•1•4•0•1•Updated May 23, 2022May 23, 2022
BooleanNetworks.jl
Public
Boolean networks in Julia
Julia
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MIT License
•0•7•0•0•Updated Feb 23, 2022Feb 23, 2022